Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_M19
(770 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X85134-1|CAA59446.1| 538|Homo sapiens RB protein binding protei... 79 2e-14
BC075060-1|AAH75060.1| 538|Homo sapiens retinoblastoma binding ... 79 2e-14
BC075059-1|AAH75059.1| 538|Homo sapiens retinoblastoma binding ... 79 2e-14
BC053856-1|AAH53856.1| 538|Homo sapiens retinoblastoma binding ... 79 2e-14
BC037284-1|AAH37284.1| 500|Homo sapiens RBBP5 protein protein. 79 2e-14
AL583832-2|CAI15287.1| 500|Homo sapiens retinoblastoma binding ... 79 2e-14
AL583832-1|CAI15286.1| 538|Homo sapiens retinoblastoma binding ... 79 2e-14
>X85134-1|CAA59446.1| 538|Homo sapiens RB protein binding protein
protein.
Length = 538
Score = 79.0 bits (186), Expect = 2e-14
Identities = 46/109 (42%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Frame = -2
Query: 769 GXXGEPXTXXXXXGXLXXNKVEKXCFSGTGVNLXR-SGEQHXXYIWGSX--RXFSRSCTE 599
G GEP + +K CFSG G + S QH YIW
Sbjct: 234 GRDGEPEPMQELQDLVNRTPWKKCCFSGDGEYIVAGSARQHALYIWEKSIGNLVKILHGT 293
Query: 598 XGGAPADVVXHPIRPXXXXXXXXXXXIWAQNQVENWSAFAPDFKELDEN 452
G DV HP+RP IWAQNQVENWSAFAPDFKELDEN
Sbjct: 294 RGELLLDVAWHPVRPIIASISSGVVSIWAQNQVENWSAFAPDFKELDEN 342
Score = 64.5 bits (150), Expect = 4e-10
Identities = 28/40 (70%), Positives = 33/40 (82%)
Frame = -1
Query: 356 EVDVTSCEAVAAFCSSDEEGEDENVLLFLPTAPEIEDPED 237
EVDVTS + +AAFCSSDEE ED LL+LP APE+EDPE+
Sbjct: 374 EVDVTSVDPIAAFCSSDEELEDSKALLYLPIAPEVEDPEE 413
>BC075060-1|AAH75060.1| 538|Homo sapiens retinoblastoma binding
protein 5 protein.
Length = 538
Score = 79.0 bits (186), Expect = 2e-14
Identities = 46/109 (42%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Frame = -2
Query: 769 GXXGEPXTXXXXXGXLXXNKVEKXCFSGTGVNLXR-SGEQHXXYIWGSX--RXFSRSCTE 599
G GEP + +K CFSG G + S QH YIW
Sbjct: 234 GRDGEPEPMQKLQDLVNRTPWKKCCFSGDGEYIVAGSARQHALYIWEKSIGNLVKILHGT 293
Query: 598 XGGAPADVVXHPIRPXXXXXXXXXXXIWAQNQVENWSAFAPDFKELDEN 452
G DV HP+RP IWAQNQVENWSAFAPDFKELDEN
Sbjct: 294 RGELLLDVAWHPVRPIIASISSGVVSIWAQNQVENWSAFAPDFKELDEN 342
Score = 64.5 bits (150), Expect = 4e-10
Identities = 28/40 (70%), Positives = 33/40 (82%)
Frame = -1
Query: 356 EVDVTSCEAVAAFCSSDEEGEDENVLLFLPTAPEIEDPED 237
EVDVTS + +AAFCSSDEE ED LL+LP APE+EDPE+
Sbjct: 374 EVDVTSVDPIAAFCSSDEELEDSKALLYLPIAPEVEDPEE 413
>BC075059-1|AAH75059.1| 538|Homo sapiens retinoblastoma binding
protein 5 protein.
Length = 538
Score = 79.0 bits (186), Expect = 2e-14
Identities = 46/109 (42%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Frame = -2
Query: 769 GXXGEPXTXXXXXGXLXXNKVEKXCFSGTGVNLXR-SGEQHXXYIWGSX--RXFSRSCTE 599
G GEP + +K CFSG G + S QH YIW
Sbjct: 234 GRDGEPEPMQKLQDLVNRTPWKKCCFSGDGEYIVAGSARQHALYIWEKSIGNLVKILHGT 293
Query: 598 XGGAPADVVXHPIRPXXXXXXXXXXXIWAQNQVENWSAFAPDFKELDEN 452
G DV HP+RP IWAQNQVENWSAFAPDFKELDEN
Sbjct: 294 RGELLLDVAWHPVRPIIASISSGVVSIWAQNQVENWSAFAPDFKELDEN 342
Score = 64.5 bits (150), Expect = 4e-10
Identities = 28/40 (70%), Positives = 33/40 (82%)
Frame = -1
Query: 356 EVDVTSCEAVAAFCSSDEEGEDENVLLFLPTAPEIEDPED 237
EVDVTS + +AAFCSSDEE ED LL+LP APE+EDPE+
Sbjct: 374 EVDVTSVDPIAAFCSSDEELEDSKALLYLPIAPEVEDPEE 413
>BC053856-1|AAH53856.1| 538|Homo sapiens retinoblastoma binding
protein 5 protein.
Length = 538
Score = 79.0 bits (186), Expect = 2e-14
Identities = 46/109 (42%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Frame = -2
Query: 769 GXXGEPXTXXXXXGXLXXNKVEKXCFSGTGVNLXR-SGEQHXXYIWGSX--RXFSRSCTE 599
G GEP + +K CFSG G + S QH YIW
Sbjct: 234 GRDGEPEPMQKLQDLVNRTPWKKCCFSGDGEYIVAGSARQHALYIWEKSIGNLVKILHGT 293
Query: 598 XGGAPADVVXHPIRPXXXXXXXXXXXIWAQNQVENWSAFAPDFKELDEN 452
G DV HP+RP IWAQNQVENWSAFAPDFKELDEN
Sbjct: 294 RGELLLDVAWHPVRPIIASISSGVVSIWAQNQVENWSAFAPDFKELDEN 342
Score = 64.5 bits (150), Expect = 4e-10
Identities = 28/40 (70%), Positives = 33/40 (82%)
Frame = -1
Query: 356 EVDVTSCEAVAAFCSSDEEGEDENVLLFLPTAPEIEDPED 237
EVDVTS + +AAFCSSDEE ED LL+LP APE+EDPE+
Sbjct: 374 EVDVTSVDPIAAFCSSDEELEDSKALLYLPIAPEVEDPEE 413
>BC037284-1|AAH37284.1| 500|Homo sapiens RBBP5 protein protein.
Length = 500
Score = 79.0 bits (186), Expect = 2e-14
Identities = 46/109 (42%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Frame = -2
Query: 769 GXXGEPXTXXXXXGXLXXNKVEKXCFSGTGVNLXR-SGEQHXXYIWGSX--RXFSRSCTE 599
G GEP + +K CFSG G + S QH YIW
Sbjct: 234 GRDGEPEPMQKLQDLVNRTPWKKCCFSGDGEYIVAGSARQHALYIWEKSIGNLVKILHGT 293
Query: 598 XGGAPADVVXHPIRPXXXXXXXXXXXIWAQNQVENWSAFAPDFKELDEN 452
G DV HP+RP IWAQNQVENWSAFAPDFKELDEN
Sbjct: 294 RGELLLDVAWHPVRPIIASISSGVVSIWAQNQVENWSAFAPDFKELDEN 342
Score = 64.5 bits (150), Expect = 4e-10
Identities = 28/40 (70%), Positives = 33/40 (82%)
Frame = -1
Query: 356 EVDVTSCEAVAAFCSSDEEGEDENVLLFLPTAPEIEDPED 237
EVDVTS + +AAFCSSDEE ED LL+LP APE+EDPE+
Sbjct: 374 EVDVTSVDPIAAFCSSDEELEDSKALLYLPIAPEVEDPEE 413
>AL583832-2|CAI15287.1| 500|Homo sapiens retinoblastoma binding
protein 5 protein.
Length = 500
Score = 79.0 bits (186), Expect = 2e-14
Identities = 46/109 (42%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Frame = -2
Query: 769 GXXGEPXTXXXXXGXLXXNKVEKXCFSGTGVNLXR-SGEQHXXYIWGSX--RXFSRSCTE 599
G GEP + +K CFSG G + S QH YIW
Sbjct: 234 GRDGEPEPMQKLQDLVNRTPWKKCCFSGDGEYIVAGSARQHALYIWEKSIGNLVKILHGT 293
Query: 598 XGGAPADVVXHPIRPXXXXXXXXXXXIWAQNQVENWSAFAPDFKELDEN 452
G DV HP+RP IWAQNQVENWSAFAPDFKELDEN
Sbjct: 294 RGELLLDVAWHPVRPIIASISSGVVSIWAQNQVENWSAFAPDFKELDEN 342
Score = 64.5 bits (150), Expect = 4e-10
Identities = 28/40 (70%), Positives = 33/40 (82%)
Frame = -1
Query: 356 EVDVTSCEAVAAFCSSDEEGEDENVLLFLPTAPEIEDPED 237
EVDVTS + +AAFCSSDEE ED LL+LP APE+EDPE+
Sbjct: 374 EVDVTSVDPIAAFCSSDEELEDSKALLYLPIAPEVEDPEE 413
>AL583832-1|CAI15286.1| 538|Homo sapiens retinoblastoma binding
protein 5 protein.
Length = 538
Score = 79.0 bits (186), Expect = 2e-14
Identities = 46/109 (42%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Frame = -2
Query: 769 GXXGEPXTXXXXXGXLXXNKVEKXCFSGTGVNLXR-SGEQHXXYIWGSX--RXFSRSCTE 599
G GEP + +K CFSG G + S QH YIW
Sbjct: 234 GRDGEPEPMQKLQDLVNRTPWKKCCFSGDGEYIVAGSARQHALYIWEKSIGNLVKILHGT 293
Query: 598 XGGAPADVVXHPIRPXXXXXXXXXXXIWAQNQVENWSAFAPDFKELDEN 452
G DV HP+RP IWAQNQVENWSAFAPDFKELDEN
Sbjct: 294 RGELLLDVAWHPVRPIIASISSGVVSIWAQNQVENWSAFAPDFKELDEN 342
Score = 64.5 bits (150), Expect = 4e-10
Identities = 28/40 (70%), Positives = 33/40 (82%)
Frame = -1
Query: 356 EVDVTSCEAVAAFCSSDEEGEDENVLLFLPTAPEIEDPED 237
EVDVTS + +AAFCSSDEE ED LL+LP APE+EDPE+
Sbjct: 374 EVDVTSVDPIAAFCSSDEELEDSKALLYLPIAPEVEDPEE 413
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,595,057
Number of Sequences: 237096
Number of extensions: 1337890
Number of successful extensions: 3642
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3620
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9311505506
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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