Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_M19
         (770 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23176-7|AAC46713.4|  454|Caenorhabditis elegans Hypothetical pr...    55   5e-08
U44759-1|AAA86906.1|  405|Caenorhabditis elegans troponin T prot...    30   1.6  
U43282-4|AAA83615.1|  405|Caenorhabditis elegans Muscle position...    30   1.6  
Z81095-3|CAB03159.2|  494|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z92835-1|CAB07395.2|  532|Caenorhabditis elegans Hypothetical pr...    28   6.4  

>U23176-7|AAC46713.4|  454|Caenorhabditis elegans Hypothetical
           protein F21H12.1 protein.
          Length = 454

 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 30/73 (41%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = -2

Query: 664 SGEQHXXYIWGSXRXFSRSCTEX--GGAPADVVXHPIRPXXXXXXXXXXXIWAQNQVENW 491
           S + H  YIW S             G A  DV  HP RP           +W Q  VENW
Sbjct: 269 STKAHSLYIWESNTGSLIKILHGNKGEALLDVQWHPTRPIILSIAQGTVSMWTQAHVENW 328

Query: 490 SAFAPDFKELDEN 452
           SAFAP+F+EL+EN
Sbjct: 329 SAFAPEFQELEEN 341


>U44759-1|AAA86906.1|  405|Caenorhabditis elegans troponin T
           protein.
          Length = 405

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -1

Query: 311 SDEEGEDENVLLFLPTAPEIEDPEDGWAATQETITPAETPEKLEP 177
           SDEE E+E V        E E+PE+    T+E + P E  E+  P
Sbjct: 9   SDEEVEEEEVEETEEAPAEAEEPEE---TTEEVVAPPEVKERRAP 50


>U43282-4|AAA83615.1|  405|Caenorhabditis elegans Muscle positioning
           protein 2 protein.
          Length = 405

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -1

Query: 311 SDEEGEDENVLLFLPTAPEIEDPEDGWAATQETITPAETPEKLEP 177
           SDEE E+E V        E E+PE+    T+E + P E  E+  P
Sbjct: 9   SDEEVEEEEVEETEEAPAEAEEPEE---TTEEVVAPPEVKERRAP 50


>Z81095-3|CAB03159.2|  494|Caenorhabditis elegans Hypothetical
           protein F59F4.3 protein.
          Length = 494

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = -1

Query: 269 PTAPEIEDPEDGWAATQETIT---PAETPEKLEPAAKRPKSKTY 147
           P+ P+ E+P+D      E +T   P     K  P +++PK K+Y
Sbjct: 193 PSRPKFEEPDDDEDEVIEVVTEPVPETGSNKASPTSEQPKWKSY 236


>Z92835-1|CAB07395.2|  532|Caenorhabditis elegans Hypothetical
           protein H19N07.1 protein.
          Length = 532

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -1

Query: 248 DPEDGWAATQETITPAETPEKLEPAAKRPKSKTYDISXEDSP 123
           +P + W A  +T   A  PE  EP A +  +    +S  ++P
Sbjct: 36  EPTEDWEAQADTSPAAVQPEVAEPVAVQESAPVAPVSATEAP 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,619,650
Number of Sequences: 27780
Number of extensions: 192928
Number of successful extensions: 612
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)