Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_M17
         (790 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    28   1.8  
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual             27   4.0  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    26   7.1  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    25   9.4  

>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 245 ASVSRPWTAANTKLYRAPEMRVRRDLQKLRLQSKNLK 355
           +S+S  WT +N K+Y +       DL  L+  + N K
Sbjct: 332 SSISSTWTPSNLKIYHSKNSMGLMDLDALKTVASNSK 368


>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
          Length = 629

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -3

Query: 509 RDELTADCWFTEVVEVK-SRTQFFSKTTRTAMKSAPL 402
           RDEL  D WFT  ++ +  R    + T  T   S PL
Sbjct: 525 RDELIRDEWFTLAIKTREKRRHKINATGMTTTNSVPL 561


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 680 VVRMYADAAVRLLDESGAEYQTACCCGPQCAALSTD 573
           V+R   DA +R +  +G    T+ C G +C  L  D
Sbjct: 861 VIRELNDARIRTVMCTGDNVLTSICVGKRCGMLPED 896


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 536 LICLK*YDCRDELTADCWFTEVVE 465
           L C+  YD  D  T D W T + E
Sbjct: 489 LCCILEYDTNDSDTLDAWLTRLFE 512


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,870,379
Number of Sequences: 5004
Number of extensions: 52945
Number of successful extensions: 122
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)