Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_M17
         (790 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   7.5  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   9.9  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   9.9  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 725 RTXTVPHRTHGLCR 766
           R  TVP  TH  CR
Sbjct: 630 RQGTVPDETHSACR 643


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 366 LYIIFKFLDCNLSFC 322
           LY++F  L   LSFC
Sbjct: 140 LYLLFATLPLRLSFC 154


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 5/16 (31%), Positives = 13/16 (81%)
 Frame = +1

Query: 211 VVILDALRVVCSLCVA 258
           + I++ + ++C+LC+A
Sbjct: 204 IAIVELIGIICALCLA 219


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,238
Number of Sequences: 438
Number of extensions: 4060
Number of successful extensions: 26
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)