Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_M13
         (779 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0687 + 24288648-24292746,24293737-24293844,24294333-242944...    28   7.2  
06_01_0394 - 2835438-2835896,2836664-2836913,2837197-2837669,283...    28   9.6  
03_06_0656 - 35330109-35331011,35331154-35331360,35331455-353316...    28   9.6  
01_06_0418 + 29210310-29210612,29211154-29211541,29211946-292121...    28   9.6  

>01_05_0687 +
           24288648-24292746,24293737-24293844,24294333-24294442,
           24295208-24295282
          Length = 1463

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -3

Query: 300 PGRIXRDAVEELLEEQHAVRLGLPALNTTQGDP 202
           P +   DAVEE+ EE H  R    A+  T G+P
Sbjct: 417 PDKAENDAVEEMQEEAHGSRF---AMEATYGEP 446


>06_01_0394 -
           2835438-2835896,2836664-2836913,2837197-2837669,
           2838941-2840608
          Length = 949

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/53 (28%), Positives = 31/53 (58%)
 Frame = +3

Query: 381 SVATGTVRMPILVAVILSVLKSFPVRSVLVITTLSAPIAVTALTIRESASAAM 539
           S++  ++ + +LVAV+L+   +  + S++    L    AVTA ++R +A A +
Sbjct: 669 SLSKASMAVWLLVAVVLATNYTASLSSLMTAQRLGREAAVTAESLRSAAGAVV 721


>03_06_0656 -
           35330109-35331011,35331154-35331360,35331455-35331632,
           35331726-35332221,35332889-35333033
          Length = 642

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -1

Query: 455 NREGFQNRQYDGYQNRHANRTGG-DGYYGNGDVSEG 351
           N  G +N  YD Y   ++N  GG   Y  NG+ S G
Sbjct: 58  NGSGGRNYDYDYYNRGYSNNNGGYQNYNYNGNNSNG 93


>01_06_0418 +
           29210310-29210612,29211154-29211541,29211946-29212143,
           29212626-29213092,29213210-29213749,29214275-29214477,
           29214567-29214624
          Length = 718

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 11/98 (11%)
 Frame = -2

Query: 571 SVAAAEAHRT-VIAAEALSLIVKAVTAIGADK---VVITKTDR------TGKDFKTDNMT 422
           ++  AEA +T  I+    + +V+A+  +  +K   V+I +++R      T KD +    T
Sbjct: 564 NLTVAEAMKTKYISVSKTTPVVEALNLMLVEKQPFVMIIESNRSLIGLVTLKDIQDFCRT 623

Query: 421 ATKIGMRTV-PVATDIMATVTCQKVHITPRTVVSGMEK 311
           A    ++T  PV T +   V C+   +TP+T ++ +EK
Sbjct: 624 AKTTRVQTEEPVQTYVCGAVKCKMWPVTPQTSLTTVEK 661


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,607,086
Number of Sequences: 37544
Number of extensions: 285285
Number of successful extensions: 883
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)