Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_M11
         (779 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical pr...    29   4.9  
Z98866-14|CAB11553.1|  524|Caenorhabditis elegans Hypothetical p...    28   8.6  
AF068721-1|AAC19263.1|  369|Caenorhabditis elegans Hypothetical ...    28   8.6  
AC006684-10|AAF39962.2|  665|Caenorhabditis elegans Hypothetical...    28   8.6  

>Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical protein
            K03H1.5 protein.
          Length = 1385

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 777  CQNNPXCQEKFLEYGLLNVXLTLVQSEQ 694
            CQNNP C+  F+  G   V LT ++ ++
Sbjct: 1138 CQNNPECEYDFIMTGRKEVGLTTLRRQK 1165


>Z98866-14|CAB11553.1|  524|Caenorhabditis elegans Hypothetical
           protein Y49E10.17 protein.
          Length = 524

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
 Frame = +2

Query: 212 ASSTTISTGLCPTNTFLRISSQYSF-SSVKLSSSGCPKCCSKVSFKCRVGSRHWSRTLGS 388
           +S T+ ST  C +     ISS     S+    SSG     S  S +   GS   S +   
Sbjct: 79  SSKTSSSTVSCTSLGSSNISSSSRQPSNGSFRSSGSSNGSSSSSRRSSNGSSSSSGSTSD 138

Query: 389 RSSSRVQSKFRKCSLVASRPPLSCSAMVLTTL 484
            SSS + S  R+ S  +SR   S S   ++++
Sbjct: 139 NSSSNISSSSRRSSNGSSRSSSSSSVGSMSSI 170


>AF068721-1|AAC19263.1|  369|Caenorhabditis elegans Hypothetical
           protein ZK1055.5 protein.
          Length = 369

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 363 RDPTLHLKETLEQHLGHPELESFTEE 286
           RDPT++L++ +  H+G      F EE
Sbjct: 47  RDPTIYLRQNVHTHIGDISFLEFREE 72


>AC006684-10|AAF39962.2|  665|Caenorhabditis elegans Hypothetical
           protein T02H6.2 protein.
          Length = 665

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -3

Query: 372 DQCRDPTLHLKETLEQHLGHPELESFTEEKEYCEEILRKVFVGHKPVE 229
           D   DPT ++KE LE+++ +   ++F E KE  E   +K     K VE
Sbjct: 499 DTKTDPTTNIKEFLERNM-YNAAKNFNEFKESIENREKKEAEARKKVE 545


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,101,071
Number of Sequences: 27780
Number of extensions: 304907
Number of successful extensions: 988
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)