Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_M10
(802 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 29 1.0
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun... 28 1.8
SPCC1223.15c |spc19||DASH complex subunit Spc19|Schizosaccharomy... 27 3.1
SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 3.1
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc... 27 3.1
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 27 3.1
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 27 4.1
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac... 27 4.1
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 26 5.4
SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease Pac1|S... 25 9.5
SPACUNK4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 9.5
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 28.7 bits (61), Expect = 1.0
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = -2
Query: 477 EKRGKADGRVTKESIGNEKTVRVTRKRKYEEITKPVLREEGQNGRATRQASERKTIKAKK 298
E AD RVT E + + ++ K + I R Q RAT E+ K K+
Sbjct: 191 ENASVADSRVTAEETSTKPSEDLSSPTKKDLIDFSETRPLAQASRATPDIKEQHAKKPKR 250
Query: 297 KET 289
K T
Sbjct: 251 KHT 253
>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
Taf7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 27.9 bits (59), Expect = 1.8
Identities = 17/69 (24%), Positives = 29/69 (42%)
Frame = -2
Query: 570 RARGEKSTRPEANERQXRSRGKRSTPATPVVEKRGKADGRVTKESIGNEKTVRVTRKRKY 391
RA GE+S E E + + + K R+ +E I ++ R++
Sbjct: 302 RAAGEESASEEEEEEEEEEEEENEADDET---RENKRQNRLVREFISELESSIQKRRKDA 358
Query: 390 EEITKPVLR 364
+E T P+LR
Sbjct: 359 DEATNPILR 367
>SPCC1223.15c |spc19||DASH complex subunit Spc19|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 152
Score = 27.1 bits (57), Expect = 3.1
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Frame = -2
Query: 405 RKRKYEEITKPVLREEGQNGRATRQASERKTIKAKKKETLTLNQQEDQMRMTRSRKRRLE 226
R+ K+EEI KP+L + Q + + +R+ K K L QE ++ M ++R
Sbjct: 59 RQAKFEEIVKPILSKAFQRLEDSISSLQRQEDSLKTKYEL----QEARLDMLKNRPATSA 114
Query: 225 VSL---SPSEVKSIV 190
S+ S ++K+I+
Sbjct: 115 FSVTTESSEQLKAII 129
>SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 325
Score = 27.1 bits (57), Expect = 3.1
Identities = 27/123 (21%), Positives = 49/123 (39%), Gaps = 6/123 (4%)
Frame = -2
Query: 573 CRARGEKSTRPEANERQXRSRGKRSTPATPVVEKRGKADGRVTK-ESIGNEKTVRVTRKR 397
C+A E + + +R+ +SR T +E + V K E I N KT
Sbjct: 91 CQACQENADLYRSQQRKLKSRWDSQTDILSQIESTKASLAEVHKAEEISNLKTSITHLDE 150
Query: 396 KYEEITKPVLREEGQNGRATRQAS-----ERKTIKAKKKETLTLNQQEDQMRMTRSRKRR 232
+ + + + + Q ++ E+K + + LTL +Q D S ++R
Sbjct: 151 EIQILQEKLAIVTNQRNTLVKRLQTYDNLEKKKALSMEDRLLTLQEQYDAHANVSSLEKR 210
Query: 231 LEV 223
+EV
Sbjct: 211 MEV 213
>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 593
Score = 27.1 bits (57), Expect = 3.1
Identities = 15/56 (26%), Positives = 31/56 (55%)
Frame = -2
Query: 363 EEGQNGRATRQASERKTIKAKKKETLTLNQQEDQMRMTRSRKRRLEVSLSPSEVKS 196
EE + R + E+K +++ +KE + N + Q+ + ++ R+ SPS++KS
Sbjct: 15 EEKRLQRQLNEIQEKKRLRSAQKEASSENAEVIQVPRSPPQQVRVLTVSSPSKLKS 70
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 27.1 bits (57), Expect = 3.1
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -2
Query: 339 TRQASERKTIKAKKKETLTLNQQEDQMRMTRSRKRRLEVSLSPSE 205
T E I K+ T T+N+ +Q+ M +S E SLS +E
Sbjct: 1611 TEWLQEEVNIMKIKELTSTVNKYREQLAMVQSLNEHAESSLSKAE 1655
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 26.6 bits (56), Expect = 4.1
Identities = 24/114 (21%), Positives = 48/114 (42%)
Frame = -2
Query: 570 RARGEKSTRPEANERQXRSRGKRSTPATPVVEKRGKADGRVTKESIGNEKTVRVTRKRKY 391
+ + E+ + + + R + K+ A +R +A+ + + + R RK
Sbjct: 581 KRKQERELKKIREKEKKRDKKKQLKLAKEEERQRREAERLAEQAAQKALEAKRQEEARKK 640
Query: 390 EEITKPVLREEGQNGRATRQASERKTIKAKKKETLTLNQQEDQMRMTRSRKRRL 229
E + +E + RQ E K K K++E QQ++ R +R++RL
Sbjct: 641 REEQRLKREQEKKQQELERQKREEKQ-KQKEREKKLKKQQQEADREKMAREQRL 693
>SPCC1393.02c |||non-specific DNA binding protein Spt2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 406
Score = 26.6 bits (56), Expect = 4.1
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = -2
Query: 450 VTKESIGNEKTVRVTRKR-KYEEITKPVLREEGQN-GRATRQASERKTIKAKKKETLTLN 277
+T+E K R R KYEE + E + +TRQ SER + A++ + +
Sbjct: 40 ITEERNRQRKLQRERELRQKYEEEQRRQQAMEAKRIAASTRQTSERPPLSAEEAKRIREV 99
Query: 276 QQEDQMRMTRSRKR 235
+++D++ ++ ++
Sbjct: 100 KEKDRLESKKNERQ 113
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 26.2 bits (55), Expect = 5.4
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -2
Query: 429 NEKTVRVTRKRKYEEITKPVLREEGQN-GRATRQASERKTIKAKKKETL 286
+E + + T RK +K L E +N R TR+ + + + KKK TL
Sbjct: 191 SELSKKYTSDRKIRNASKKALLELHRNTARLTRETALKPEVVVKKKVTL 239
>SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease
Pac1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 25.4 bits (53), Expect = 9.5
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -3
Query: 596 EVPKDSPRAAQEEKSRRXQRPTRGNXAVAAREAPPPLPWLRSE 468
E P P+ +K++ PT + E PPPLP LRSE
Sbjct: 103 EEPSSHPK---NQKNQENNEPT--SEEFEEGEYPPPLPPLRSE 140
>SPACUNK4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 188
Score = 25.4 bits (53), Expect = 9.5
Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Frame = -2
Query: 510 GKRSTPATPVVEKRGKADGRVTKESIGNEKT-----VRVTRKRKYEEITKPVLREEGQNG 346
G + T + + E+ + V+K++ + K + ++KRK E+++ V+
Sbjct: 111 GTKITDTSELTERERRKQELVSKKAEASRKMEVKAPAKESKKRKVNELSQDVISLHSPKE 170
Query: 345 RATRQASERKTIKAKKK 295
R+ + K K KK+
Sbjct: 171 SNARKTKKNKNKKKKKR 187
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,395,004
Number of Sequences: 5004
Number of extensions: 39674
Number of successful extensions: 167
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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