Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_M09
(793 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 62 9e-11
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 56 6e-09
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 50 3e-07
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 48 2e-06
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 46 8e-06
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 45 1e-05
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 45 1e-05
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 44 2e-05
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 42 8e-05
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 40 4e-04
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 36 0.005
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb... 33 0.047
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch... 32 0.082
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 31 0.25
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 28 1.3
SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 28 1.3
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces... 27 3.1
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 4.1
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces... 26 5.4
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 26 5.4
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 26 5.4
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha... 26 7.1
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom... 25 9.4
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 25 9.4
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 62.1 bits (144), Expect = 9e-11
Identities = 31/72 (43%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Frame = -2
Query: 462 RPGPLQLHMVKHSDARPFECEY--CKKTFQRKTTLKMHRRIHTNDK--RCVCKECGKAFV 295
RP L+ H+ HS+ RPF C+Y C K F RK+ LK+H+R HTN K C C F
Sbjct: 36 RPSLLEQHLRTHSNERPFVCDYTGCSKAFYRKSHLKIHKRCHTNVKPFSCHYDGCDAQFY 95
Query: 294 QTASLKLHLRVH 259
L+ H+ VH
Sbjct: 96 TQQHLERHIEVH 107
Score = 46.4 bits (105), Expect = 5e-06
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Frame = -2
Query: 411 FECEY--CKKTFQRKTTLKMHRRIHTNDKRCVC--KECGKAFVQTASLKLHLRVH 259
F C Y C K + R + L+ H R H+N++ VC C KAF + + LK+H R H
Sbjct: 23 FHCPYEECGKKYSRPSLLEQHLRTHSNERPFVCDYTGCSKAFYRKSHLKIHKRCH 77
Score = 40.3 bits (90), Expect = 3e-04
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Frame = -2
Query: 462 RPGPLQLHMVKHSDARPFECEY--CKKTFQRKTTLKMHRRIHTNDK--RCVCKECGKAFV 295
R L++H H++ +PF C Y C F + L+ H +H K C + C + F
Sbjct: 66 RKSHLKIHKRCHTNVKPFSCHYDGCDAQFYTQQHLERHIEVHRKPKPYACTWEGCDECFS 125
Query: 294 QTASLKLHLRVHH 256
+ L+ H+ H
Sbjct: 126 KHQQLRSHISACH 138
Score = 34.3 bits (75), Expect = 0.020
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Frame = -2
Query: 495 HVPSLRPETIQRPGPLQLHMVKHSDARPFECEYCKKTFQRKTTLKMHRRIH--TNDKR-- 328
H + E ++ LQ H+ +A C C + F+ L+ H +H T ++R
Sbjct: 179 HESCVGHEGFEKWSQLQNHI---REAHVPSCSICGRQFKTAAHLRHHVVLHQTTLEERKT 235
Query: 327 --CVCKECGKAFVQTASLKLHLRVHHPG 250
C + C K+F ++++LK H+ V H G
Sbjct: 236 YHCPMEGCKKSFTRSSALKKHISVIHEG 263
Score = 30.3 bits (65), Expect = 0.33
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = -3
Query: 659 CLEVFTSKYTRNRHLAIVHDVKTLQFRCDQCPQVFIKHGCLVEHKSRVHIKE-KTVTCQV 483
C + FT +H++++H+ + F CD C F L H R K+
Sbjct: 243 CKKSFTRSSALKKHISVIHE-GNMAFHCDSCGTKFGYKHMLQRHLERGTCKKAHKPYINE 301
Query: 482 CGLK 471
CG+K
Sbjct: 302 CGIK 305
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 56.0 bits (129), Expect = 6e-09
Identities = 22/62 (35%), Positives = 35/62 (56%)
Frame = -2
Query: 450 LQLHMVKHSDARPFECEYCKKTFQRKTTLKMHRRIHTNDKRCVCKECGKAFVQTASLKLH 271
L+ HM H++ RPF+C CKK+F R+ + H ++HT K C C + F + +L H
Sbjct: 587 LKSHMNTHTNYRPFQCSICKKSFARQHDKRRHEQLHTGIKAFACVTCNQRFARMDALNRH 646
Query: 270 LR 265
+
Sbjct: 647 YK 648
Score = 37.1 bits (82), Expect = 0.003
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -2
Query: 396 CKKTFQRKTTLKMHRRIHTNDKRCVCKECGKAFVQTASLKLHLRVH 259
C K F R LK H HTN + C C K+F + + H ++H
Sbjct: 577 CNKRFTRAYNLKSHMNTHTNYRPFQCSICKKSFARQHDKRRHEQLH 622
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 50.4 bits (115), Expect = 3e-07
Identities = 26/66 (39%), Positives = 34/66 (51%)
Frame = -2
Query: 468 IQRPGPLQLHMVKHSDARPFECEYCKKTFQRKTTLKMHRRIHTNDKRCVCKECGKAFVQT 289
I R ++ H+ H RP+ C+ CK F R LK H RIH N + VC EC K F +
Sbjct: 454 IARKYNVESHIQTHLSDRPYRCDLCKAGFVRHHDLKRHLRIHENGRPYVC-ECLKRFNRL 512
Query: 288 ASLKLH 271
+L H
Sbjct: 513 DALNRH 518
Score = 31.1 bits (67), Expect = 0.19
Identities = 21/66 (31%), Positives = 30/66 (45%)
Frame = -3
Query: 659 CLEVFTSKYTRNRHLAIVHDVKTLQFRCDQCPQVFIKHGCLVEHKSRVHIKEKTVTCQVC 480
C + KY H+ H + +RCD C F++H L H R+H + C+ C
Sbjct: 450 CNKRIARKYNVESHIQ-TH-LSDRPYRCDLCKAGFVRHHDLKRH-LRIHENGRPYVCE-C 505
Query: 479 GLKLFN 462
LK FN
Sbjct: 506 -LKRFN 510
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 47.6 bits (108), Expect = 2e-06
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Frame = -2
Query: 507 GEDGHVPSLRPETIQRPGPLQLHMVKHSDARPFECEYCKKTFQRKTTLKMH-RRIHTNDK 331
G DG S++ ++P + + + + F C C K F+R L+ H R +HT++K
Sbjct: 394 GTDG---SMKRRKRRQPSNRKTSVPRSPGGKSFVCPECSKKFKRSEHLRRHIRSLHTSEK 450
Query: 330 RCVCKECGKAFVQTASLKLHLRVH 259
VC CGK F + +L+ H R+H
Sbjct: 451 PFVC-ICGKRFSRRDNLRQHERLH 473
Score = 35.1 bits (77), Expect = 0.012
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -2
Query: 429 HSDARPFECEYCKKTFQRKTTLKMHRRIHTN-DKRCVC 319
H+ +PF C C K F R+ L+ H R+H N R C
Sbjct: 446 HTSEKPFVC-ICGKRFSRRDNLRQHERLHVNASPRLAC 482
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 333 KRCVCKECGKAFVQTASLKLHLRVHH 256
K VC EC K F ++ L+ H+R H
Sbjct: 421 KSFVCPECSKKFKRSEHLRRHIRSLH 446
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 45.6 bits (103), Expect = 8e-06
Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = -2
Query: 432 KHSDA-RPFECEYCKKTFQRKTTLKMHRRIHTNDKRCVC--KECGKAFVQTASLKLHLRV 262
K+ DA RP++C C K F R H R HT +K VC C K F ++ L H R+
Sbjct: 18 KNPDAPRPYKCPLCTKAFYRLEHQTRHIRTHTGEKPHVCTFPGCAKRFSRSDELTRHARI 77
Query: 261 H 259
H
Sbjct: 78 H 78
Score = 33.9 bits (74), Expect = 0.027
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -2
Query: 441 HMVKHSDARPFECEY--CKKTFQRKTTLKMHRRIHTN 337
H+ H+ +P C + C K F R L H RIHTN
Sbjct: 44 HIRTHTGEKPHVCTFPGCAKRFSRSDELTRHARIHTN 80
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 45.2 bits (102), Expect = 1e-05
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = -2
Query: 453 PLQLHMVKHSDARP-FECEY--CKKTFQRKTTLKMHRRIHTNDKRCVCKECGKAFVQTAS 283
PL+ H P F C Y C K+F RK L+ H R H N K C C +AF ++
Sbjct: 11 PLKKRSRAHRLGDPRFYCTYPDCPKSFTRKEHLRRHERTHENVKAFSCSFCNRAFARSDV 70
Query: 282 LKLHLRVHH 256
L H++ H
Sbjct: 71 LNRHVQQMH 79
Score = 33.1 bits (72), Expect = 0.047
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -2
Query: 477 PETIQRPGPLQLHMVKHSDARPFECEYCKKTFQRKTTLKMH 355
P++ R L+ H H + + F C +C + F R L H
Sbjct: 34 PKSFTRKEHLRRHERTHENVKAFSCSFCNRAFARSDVLNRH 74
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 44.8 bits (101), Expect = 1e-05
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = -2
Query: 411 FECEY--CKKTFQRKTTLKMHRRIHTNDKRCVCKECGKAFVQTASLKLHLRVHH 256
++C++ C K+F RK + H R HTN K +C C +F ++ L H+ H
Sbjct: 17 YKCDFQGCTKSFTRKEHARRHFRSHTNSKAFICPHCSSSFTRSDVLNRHVNQKH 70
Score = 28.3 bits (60), Expect = 1.3
Identities = 16/58 (27%), Positives = 23/58 (39%)
Frame = -3
Query: 659 CLEVFTSKYTRNRHLAIVHDVKTLQFRCDQCPQVFIKHGCLVEHKSRVHIKEKTVTCQ 486
C + FT K RH + K F C C F + L H ++ H+K+ Q
Sbjct: 24 CTKSFTRKEHARRHFRSHTNSKA--FICPHCSSSFTRSDVLNRHVNQKHVKQNDAGSQ 79
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 44.4 bits (100), Expect = 2e-05
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = -2
Query: 411 FECEYCKKTFQRKTTLKMHRRIHTNDKRCVC--KECGKAFVQTASLKLHLRVH 259
+ C C + F R ++LK+H HT ++ VC CGKAF ++++ H R+H
Sbjct: 468 YRCTECLQGFSRPSSLKIHTYSHTGERPFVCDYAGCGKAFNVRSNMRRHQRIH 520
Score = 44.0 bits (99), Expect = 3e-05
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = -2
Query: 462 RPGPLQLHMVKHSDARPFECEY--CKKTFQRKTTLKMHRRIH 343
RP L++H H+ RPF C+Y C K F ++ ++ H+RIH
Sbjct: 479 RPSSLKIHTYSHTGERPFVCDYAGCGKAFNVRSNMRRHQRIH 520
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 42.3 bits (95), Expect = 8e-05
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = -2
Query: 417 RPFECEYCKKTFQRKTTLKMHRRIHTNDK--RCVCKECGKAFVQTASLKLHLRVH 259
+ +EC +CK+ F R+ H R HT +K C C K F + L H+R H
Sbjct: 2 KSYECPFCKRVFHRQEHQVRHIRSHTGEKPFECSYPSCKKRFTRRDELIRHVRTH 56
Score = 36.7 bits (81), Expect = 0.004
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = -2
Query: 441 HMVKHSDARPFECEY--CKKTFQRKTTLKMHRRIH 343
H+ H+ +PFEC Y CKK F R+ L H R H
Sbjct: 22 HIRSHTGEKPFECSYPSCKKRFTRRDELIRHVRTH 56
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 39.9 bits (89), Expect = 4e-04
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 7/91 (7%)
Frame = -2
Query: 417 RPFECEYCKKTFQRKTTLKMHRRIHTNDKRCVCKE-------CGKAFVQTASLKLHLRVH 259
+ + CE C + F R LK H R HTN+K C E CG+ F + L H +
Sbjct: 68 KQYVCETCTRAFARLEHLKRHIRSHTNEKPFTCSEIDGLPTGCGRQFSRRDLLLRHQQKI 127
Query: 258 HPGAEGR*PYRNNSPEQGPKSDLYCIRNTRI 166
H + R R+ + P + T +
Sbjct: 128 HRNPQPRRRRRSTTALPNPSLSNVSVSTTNL 158
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 36.3 bits (80), Expect = 0.005
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -2
Query: 450 LQLHMVKHSDARPFECEYCKKTFQRKTTLKMHRRIHTNDKRCV 322
L H HS A P C YC+ +RK LK H + NDK +
Sbjct: 46 LTRHKACHSKAEPIPCPYCEIKCKRKDLLKRHIQRFHNDKSVI 88
Score = 35.9 bits (79), Expect = 0.007
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -3
Query: 584 FRCDQCPQVFIKHGCLVEHKSRVHIKEKTVTCQVCGLK 471
F CDQC + F +H L HK+ H K + + C C +K
Sbjct: 31 FPCDQCAKRFTRHENLTRHKA-CHSKAEPIPCPYCEIK 67
Score = 33.9 bits (74), Expect = 0.027
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = -2
Query: 417 RPFECEYCKKTFQRKTTLKMHRRIHTNDKRCVCKECGKAFVQTASLKLHLRVHH 256
R F C+ C K F R L H+ H+ + C C + LK H++ H
Sbjct: 29 RVFPCDQCAKRFTRHENLTRHKACHSKAEPIPCPYCEIKCKRKDLLKRHIQRFH 82
>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 478
Score = 33.1 bits (72), Expect = 0.047
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -3
Query: 584 FRCDQCPQVFIKHGCLVEHKSRVHIKEKTV 495
FRCD+C +F+K L HK H E V
Sbjct: 139 FRCDKCDMMFVKQSGLTNHKRTYHQVETVV 168
>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 32.3 bits (70), Expect = 0.082
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Frame = -2
Query: 417 RP-FECEY--CKKTFQRKTT---LKMHRRIHTNDKRCVCK--ECGKAFVQTASLKLHLRV 262
RP + CE+ C + +T+ L H R HT +K +C EC ++F ++ +L H+R
Sbjct: 70 RPKYTCEWDDCPRKGMVQTSRFALVAHLRSHTGEKPFICSVPECDRSFTRSDALAKHMRT 129
Query: 261 HH 256
H
Sbjct: 130 VH 131
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 30.7 bits (66), Expect = 0.25
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -2
Query: 477 PETIQRPGPLQLHMVKHSDARPFECEYCKKTFQRKTTLKMHR 352
P T P P+ H + +P+ CE C K ++ LK HR
Sbjct: 378 PITTPTPAPIP-HQGFVVENKPYRCEVCSKRYKNLNGLKYHR 418
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 28.3 bits (60), Expect = 1.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 309 RTPCTHTSYRSCVFAYAFSTWSSS 380
R P +HT Y SC F Y F + S++
Sbjct: 1990 RYPSSHTYYASCCFLYLFKSSSNN 2013
>SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 283
Score = 28.3 bits (60), Expect = 1.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 514 CTLDLCSTRQPCLINTCGHWSQ 579
C + LC+T P L+NTC + +Q
Sbjct: 193 CNMTLCNTDYPYLVNTCFNGTQ 214
>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 735
Score = 27.1 bits (57), Expect = 3.1
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +3
Query: 381 GMSFCSTHIRRVSHRCASP 437
G++FC++H+RR C +P
Sbjct: 694 GLTFCNSHMRRALGACTTP 712
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.6 bits (56), Expect = 4.1
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +2
Query: 281 KLAVCTNALPHSLHTHLLSFVCIRLCIFNVVFLWNVFLQYSHSKGLASLCFTMCSCR 451
+L VCT +LP+S H LC + W+V +S +G A L + C+ R
Sbjct: 2577 QLKVCTGSLPYSPTEHGFWLDHWILCA-QKLNQWDVLFDFSKQEGCAEL-YLECAWR 2631
>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 815
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 231 KAISLQRRDGAPSNAASNWRSARTPC 308
+ I L+ +D P N A++W A T C
Sbjct: 720 ETIYLELKDSMPPNEAADWMIATTSC 745
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 69 VTPRNRSPGCKTASIKTQSTN*NISETHSST 161
+TP + S KTA+ T ST N+ E + ST
Sbjct: 119 ITPIDSSTPTKTATFYTSSTTENLDELNFST 149
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 26.2 bits (55), Expect = 5.4
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +1
Query: 388 LFAVLTFEGSRIAVLHHVQLQGPWSLNSFRPQTWHVTVFSFMCTLDLCSTR 540
L A L+ EG +AV +HV+ P+ + VFS++ LDLC +
Sbjct: 48 LLASLSKEGV-VAVYNHVRSLLFTDFTEVFPEEVSLRVFSYLDQLDLCKCK 97
>SPBC36.09 |sap61||U2 snRNP-associated protein
sap61|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 25.8 bits (54), Expect = 7.1
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -2
Query: 411 FECEYCKKTFQRKTTLKMHRRIHTNDK 331
F CE C+K F + T + H++ ++K
Sbjct: 243 FYCEVCQKFFGKITVFEAHKKSKAHNK 269
>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 554
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = +3
Query: 81 NRSPGCKTASIKTQSTN*NISETHSSTIIFVCYVCNINRT*GLALANCSDKAISLQRRD 257
N +PG +A +T + + I F+ Y N N T A CS+ + ++R +
Sbjct: 126 NSTPGSISADYRTTAITTIYANAMECPICFLYYPSNFNYTRCCAQPICSECFVEIRRAE 184
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 325 TPLIVRVYSPMHFQRGLPLECLFAVL 402
TPL +R + P FQ+ +C +AVL
Sbjct: 989 TPLEIRHWCPYGFQKSTSDKCRYAVL 1014
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,186,658
Number of Sequences: 5004
Number of extensions: 69871
Number of successful extensions: 245
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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