Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_M07
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|...    49   6e-07
SPAC186.05c |||human TMEM165 homolog|Schizosaccharomyces pombe|c...    43   5e-05
SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub...    30   0.40 
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    28   1.6  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    27   2.8  
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac...    27   2.8  
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    26   6.6  
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch...    25   8.7  
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    25   8.7  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    25   8.7  
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos...    25   8.7  
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce...    25   8.7  

>SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 287

 Score = 49.2 bits (112), Expect = 6e-07
 Identities = 21/43 (48%), Positives = 29/43 (67%)
 Frame = -3

Query: 396 EDAVGVVVGGSLGHALCTGLAVIGGRMVAQKISVRTVTIIGGI 268
           ++  GV +G ++GHA CT LAVI G+ ++ KI V  V  IGGI
Sbjct: 230 DNVYGVFMGANVGHACCTALAVISGKYISTKIKVHKVMFIGGI 272



 Score = 38.3 bits (85), Expect = 0.001
 Identities = 14/26 (53%), Positives = 22/26 (84%)
 Frame = -2

Query: 481 VLLQAATLTFLAEWGDRSQLATVVLA 404
           + ++A  LTF++EWGDRSQ+AT+ +A
Sbjct: 202 LFIKAFALTFVSEWGDRSQIATIAMA 227



 Score = 28.7 bits (61), Expect = 0.93
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 717 VIPRVYTXYVSAALFAIFGIKMLRDGWK-MDPNE 619
           + PR  T  +   LF IFGIKML +  + MD  E
Sbjct: 107 LFPRKLTDILGGVLFVIFGIKMLMEAKEVMDSKE 140


>SPAC186.05c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 262

 Score = 42.7 bits (96), Expect = 5e-05
 Identities = 19/44 (43%), Positives = 28/44 (63%)
 Frame = -3

Query: 399 REDAVGVVVGGSLGHALCTGLAVIGGRMVAQKISVRTVTIIGGI 268
           +E  + V +G ++GH LCT +AVI GR ++ KI +  V   GGI
Sbjct: 205 KEKVLDVFIGVNIGHMLCTMVAVIVGRYISNKIEMYKVLFFGGI 248



 Score = 34.3 bits (75), Expect = 0.019
 Identities = 13/31 (41%), Positives = 23/31 (74%)
 Frame = -2

Query: 484 KVLLQAATLTFLAEWGDRSQLATVVLATKRR 392
           +  ++A  L F++E GDRSQ+AT+V++ K +
Sbjct: 177 RAFIKAFALIFVSELGDRSQIATIVMSAKEK 207



 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 717 VIPRVYTXYVSAALFAIFGIKMLRD 643
           + P+  T  +   LF IFG+KML++
Sbjct: 84  LFPKSITHILGGTLFLIFGVKMLKE 108


>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
           subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 214

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 647 GTAGKWTQTKVREELEEVQSELKRREDQEEKEETLDMLEQ 528
           G   K  +   +EE EE Q   +  E++EE+EE  D LE+
Sbjct: 113 GKEAKEPEEPPKEEAEEPQEGGEEEEEEEEEEEITDPLEK 152


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = -1

Query: 629 TQTKVREELEEVQSELKRREDQEEKEETLDMLEQGQAENK 510
           T +++  + EE++ E    E++EE+EE  +   + + E+K
Sbjct: 345 TTSRIETQEEEIKEEEMEGEEEEEEEEVPNYESENELEDK 384


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
            Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
 Frame = -1

Query: 632  WTQTKVREELEEVQSELKRREDQEEKEETLDMLEQGQAEN---KPEET*CDTESAATSR 465
            W      EE+E ++ E +    Q  KEE  +  E+ + EN    P  T   T  + T R
Sbjct: 942  WDDIIPEEEMERIEEEERMLAAQRAKEEERERREEEERENDEDHPSRTYKRTTKSITKR 1000


>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
           CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 797

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/27 (37%), Positives = 21/27 (77%)
 Frame = -1

Query: 614 REELEEVQSELKRREDQEEKEETLDML 534
           +EE+E+   + +R E+++E++ETL +L
Sbjct: 684 KEEVEKKDGDKERNEEKKEEKETLPVL 710


>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -1

Query: 611 EELEEVQSELKRREDQEEKEETLDMLEQGQAENKPEE 501
           ++++ +  EL   + QEE+E+  D    G+A+  PEE
Sbjct: 40  DDIDALIEELFSEDVQEEQEDNDDAPAAGEAKAVPEE 76


>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 161

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = -1

Query: 644 TAGKWTQTKVREELEE--VQSELKRREDQEEK-EETLDMLEQGQAE 516
           T  K  QT V+ E  E  VQS  + R+D E+K EE  D   + +AE
Sbjct: 105 TTEKMRQTDVKAEHFERRVQSLERERDDMEQKLEEMTDKYTKVKAE 150


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -1

Query: 686 ARPCSRYSASKC*-GTAGKWTQTKVREELEEVQSELKRREDQEEKEETLDMLEQ 528
           A+PC  Y    C  G  G  TQT+ + +L E   E    ED+E+  E +    Q
Sbjct: 305 AQPC--YCGEPCCVGYIGGKTQTEAQSKLPENVREALGIEDEEDSWENITARRQ 356


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 15  FCKTYQTHVAVKNLTLTDVAVFEINTLLYC 104
           F +TY   V V NL   +   F+ +TLL C
Sbjct: 435 FWETYYEEVKVVNLPEENTTEFQASTLLVC 464


>SPAC664.03 |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 457

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 617 VREELEEVQSELKRREDQEEKEETLDMLEQGQAEN 513
           + EEL E +   + RE  E  E+T  +  + QA+N
Sbjct: 390 LNEELSEEEKPAESREQLESAEQTNGVKPETQAQN 424


>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -1

Query: 620 KVREELEEVQSELKRREDQEEKEETLDMLEQ 528
           K+R ELEE+  +    E+Q+E  +  +ML++
Sbjct: 64  KIRSELEELWEQSMMYEEQKELTQLGEMLDR 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,545,932
Number of Sequences: 5004
Number of extensions: 43803
Number of successful extensions: 171
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)