Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_M07
         (746 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   1.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   1.7  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   7.0  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   9.3  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   9.3  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 414 LCWRPREDAVGVVVGGSLGHAL 349
           LCW   ED +     G+L HAL
Sbjct: 158 LCWTQDEDVICSTPIGNLSHAL 179


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 414 LCWRPREDAVGVVVGGSLGHAL 349
           LCW   ED +     G+L HAL
Sbjct: 211 LCWTQDEDIICSTPIGNLSHAL 232


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = -2

Query: 421 ATVVLATKRRRCWRCSRGVARTRAVHGLGCDRRKNGGAEDICE 293
           A   L +KRR    CS G A + +      +  ++ G+  + E
Sbjct: 162 AAAALLSKRRSVSECSLGTASSTSSTASSRNSDRSAGSPSVSE 204


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 709 KSVHVXRQRGLVRDIRHQNVEGRLENGPK 623
           ++V +   R ++ DI+H N     +NG K
Sbjct: 207 ENVKLKELRIILEDIKHINTRHNTKNGMK 235


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 5/16 (31%), Positives = 10/16 (62%)
 Frame = -2

Query: 316 GGAEDICEDCYNNWWY 269
           G  + +C++  N WW+
Sbjct: 353 GFLQPVCQNEMNKWWW 368


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,652
Number of Sequences: 438
Number of extensions: 3452
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)