Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_M05
(775 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom... 30 0.32
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 29 0.74
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 28 1.3
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc... 27 2.3
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 26 5.2
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 26 5.2
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 26 5.2
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 26 5.2
SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces... 26 5.2
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 26 6.9
SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 26 6.9
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo... 26 6.9
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 9.1
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces... 25 9.1
>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 30.3 bits (65), Expect = 0.32
Identities = 18/59 (30%), Positives = 25/59 (42%)
Frame = -2
Query: 324 YYNNYDGSNPQAPVCSQPCLNGVCVEGNRCSCNTGYVTDSMDPSGFRCIPHCAGGCPNG 148
+YN + G Q P+ SQ CV S ++GY +P F C+ G C G
Sbjct: 74 WYNKWSGGMRQDPLKSQVKSETRCV----ISRDSGYTKADKNPGSFFCLYFARGMCSEG 128
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 29.1 bits (62), Expect = 0.74
Identities = 23/69 (33%), Positives = 28/69 (40%)
Frame = -2
Query: 672 PLPSPGQQPIYPTQQFNQTQMPPHYPNQNVYPYPSPLQPWFPGQIPANGNHTQNGFLDLS 493
P P P Q YP Q + P +YP Q Y P QP + ++G LS
Sbjct: 100 PQPYPPQGG-YPQQPYYYPNQPNYYPAQPAYAQPVYAQP------ATSARRGRSGV--LS 150
Query: 492 NRTVPGQGG 466
N V G GG
Sbjct: 151 NPMVTGLGG 159
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 28.3 bits (60), Expect = 1.3
Identities = 19/60 (31%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Frame = -2
Query: 672 PLPSPGQQPIYPTQQFNQTQMPPHYPNQN-----VYPYPSPLQPWFPGQIPANGNHTQNG 508
P P P P P Q N +Q+P N N V P P P P + P N + G
Sbjct: 236 PAPPPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIPPPPATPSQPPRPPTNASTRSTG 295
>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 688
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/42 (30%), Positives = 17/42 (40%)
Frame = -2
Query: 231 CNTGYVTDSMDPSGFRCIPHCAGGCPNGVCSAPNLCICNMGY 106
C++G S G C PN +C +PN C GY
Sbjct: 348 CDSGASGSSASILGISFPSLCRTCPPNAICPSPNYVECKPGY 389
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 26.2 bits (55), Expect = 5.2
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 10/58 (17%)
Frame = -2
Query: 648 PIYPTQQFNQTQMPPHYP-----NQNVYPYPSPLQ-PWFPGQIPANGNH----TQNGF 505
P PTQ + PPH+P + N YP P Q P PG +H + NGF
Sbjct: 162 PFPPTQHHHPHTRPPHHPPHPHFHNNNYPPPYCFQSPVSPGATVPLQHHSPYPSDNGF 219
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 26.2 bits (55), Expect = 5.2
Identities = 8/29 (27%), Positives = 16/29 (55%)
Frame = +3
Query: 429 KADTDSSLDGEGSHLDQVQCDWISPGSRF 515
K + L S ++Q++CDW++ +F
Sbjct: 1118 KGVIEKCLSSVASRINQIKCDWVTDPEKF 1146
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -2
Query: 663 SPGQQPIYPTQQFNQTQMPPHYPNQN 586
SP QP QQ +T PP+ PN N
Sbjct: 314 SPQDQPSTQQQQPQRTAAPPNNPNVN 339
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 26.2 bits (55), Expect = 5.2
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -3
Query: 740 STPTLENNYFDSNPSPYQPPYPDHYRARA-NSP 645
S+P L + S PSP PP P ++ A N P
Sbjct: 373 SSPALTSENLSSKPSPLFPPPPPRVKSLATNKP 405
>SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 378
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 118 TDAQVWCRADTIRTPSGTVRYAPKSTGVHTISDISS 225
TD Q A + P+GT+ Y P S + + +I+S
Sbjct: 343 TDVQSHATARCLCDPTGTIDYLPFSCAIKWLENINS 378
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 25.8 bits (54), Expect = 6.9
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = -2
Query: 666 PSPGQQPIYPTQQF--NQTQMPPHYPNQNVYPYPSPLQP 556
P+ G QP+YPT F + + +PN P L P
Sbjct: 113 PTQGGQPLYPTNFFTTSVSASSDSFPNSPTVPSKFSLNP 151
>SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 624
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/34 (35%), Positives = 14/34 (41%)
Frame = +1
Query: 148 TIRTPSGTVRYAPKSTGVHTISDISSVAGASVAF 249
T+ PS YAP T S SSV + F
Sbjct: 578 TVNNPSAVSNYAPTVLSASTTSGTSSVRAKPIVF 611
>SPCC777.13 |vps35||retromer complex subunit
Vps35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 25.8 bits (54), Expect = 6.9
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +3
Query: 258 LRSDKAESIQAPEDLTRHNCYNSPHVRNLCLVLVAAHSIRSWIDWAENI 404
LRS K I+A E++ Y P V N C+ L I +DWAE +
Sbjct: 487 LRSLKDTFIKAGENVK----YLLPVVVNRCIFLARNFRIFKCMDWAEKV 531
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
EF hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.4 bits (53), Expect = 9.1
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = -2
Query: 660 PG-QQPIYPTQQFNQTQMPPHYPNQNVYPYPSPLQPWFPG 544
PG QQP+ P + Q P Q + P + +QP PG
Sbjct: 657 PGMQQPMAPQRTGMQPMAPQRTGMQPMMPQRTGMQPQMPG 696
>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 25.4 bits (53), Expect = 9.1
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -2
Query: 510 GFLDLSNRTVPGQG 469
GF DL++RT+PG G
Sbjct: 197 GFYDLAHRTLPGNG 210
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,022,270
Number of Sequences: 5004
Number of extensions: 65129
Number of successful extensions: 226
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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