Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_M04
(782 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39848-6|AAL11100.1| 317|Caenorhabditis elegans Not-like (yeast... 222 3e-58
U39848-5|AAL11099.1| 367|Caenorhabditis elegans Not-like (yeast... 222 3e-58
U39848-4|AAA80691.1| 444|Caenorhabditis elegans Not-like (yeast... 222 3e-58
U41993-8|AAA83449.1| 497|Caenorhabditis elegans Temporarily ass... 73 2e-13
U41993-7|AAA83450.2| 733|Caenorhabditis elegans Temporarily ass... 73 2e-13
Z92826-9|CAD90172.1| 701|Caenorhabditis elegans Hypothetical pr... 59 4e-09
Z92826-5|CAB07318.1| 198|Caenorhabditis elegans Hypothetical pr... 59 4e-09
AL132860-33|CAB60507.2| 701|Caenorhabditis elegans Hypothetical... 59 4e-09
AF101318-5|AAC69347.1| 574|Caenorhabditis elegans Hypothetical ... 30 1.6
U28740-6|AAA68322.4| 317|Caenorhabditis elegans Tetraspanin fam... 29 5.0
L23651-7|AAM22042.1| 926|Caenorhabditis elegans Associated with... 28 6.6
L23651-6|AAK84496.3| 960|Caenorhabditis elegans Associated with... 28 6.6
>U39848-6|AAL11100.1| 317|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 2, isoform c protein.
Length = 317
Score = 222 bits (542), Expect = 3e-58
Identities = 102/199 (51%), Positives = 140/199 (70%), Gaps = 1/199 (0%)
Frame = -3
Query: 678 GIQTSPEGKVTNIPDTMIPNQFGIVGLLTFIRAAESDPSLVSLALGQDLTALGLNLN-SP 502
GI T P+G+VTNIP +M+ +QFG+ GL+T++R ++ PS+VSLALG DLT LGLNLN S
Sbjct: 36 GIITHPDGEVTNIPASMLDDQFGMAGLVTYLRTVDN-PSIVSLALGYDLTTLGLNLNLSE 94
Query: 501 DNLNLTFAGPWADTPCRPQDMDYHVPPEYLINGSIREKLAPLRLGRYKEDLLFYLFYCFV 322
L + F GPWAD+P R ++D VP EY+ + IR+KL PLRL + ED+LFYLFY
Sbjct: 95 RKLYMNFGGPWADSPIRAHELDVKVPEEYMTHNHIRDKLPPLRLNKVSEDVLFYLFYNCP 154
Query: 321 GDVLQIAAAAELNNREWRYHMEEKVWISQAPGMPMVEKTSTYERGTYYFFDAHNWRKVPK 142
++ Q+AAA EL REWR+H E+VW++++ + E+T YE+G Y FD WRK+PK
Sbjct: 155 NEIYQVAAACELYAREWRFHKSEQVWLTRSQYGGVKEQTGNYEKGHYNVFDQMQWRKIPK 214
Query: 141 EFHLDYSKLEGRPQLPPHV 85
E L+Y +LE RP++P V
Sbjct: 215 ELKLEYKELEDRPKMPQSV 233
>U39848-5|AAL11099.1| 367|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 2, isoform b protein.
Length = 367
Score = 222 bits (542), Expect = 3e-58
Identities = 102/199 (51%), Positives = 140/199 (70%), Gaps = 1/199 (0%)
Frame = -3
Query: 678 GIQTSPEGKVTNIPDTMIPNQFGIVGLLTFIRAAESDPSLVSLALGQDLTALGLNLN-SP 502
GI T P+G+VTNIP +M+ +QFG+ GL+T++R ++ PS+VSLALG DLT LGLNLN S
Sbjct: 86 GIITHPDGEVTNIPASMLDDQFGMAGLVTYLRTVDN-PSIVSLALGYDLTTLGLNLNLSE 144
Query: 501 DNLNLTFAGPWADTPCRPQDMDYHVPPEYLINGSIREKLAPLRLGRYKEDLLFYLFYCFV 322
L + F GPWAD+P R ++D VP EY+ + IR+KL PLRL + ED+LFYLFY
Sbjct: 145 RKLYMNFGGPWADSPIRAHELDVKVPEEYMTHNHIRDKLPPLRLNKVSEDVLFYLFYNCP 204
Query: 321 GDVLQIAAAAELNNREWRYHMEEKVWISQAPGMPMVEKTSTYERGTYYFFDAHNWRKVPK 142
++ Q+AAA EL REWR+H E+VW++++ + E+T YE+G Y FD WRK+PK
Sbjct: 205 NEIYQVAAACELYAREWRFHKSEQVWLTRSQYGGVKEQTGNYEKGHYNVFDQMQWRKIPK 264
Query: 141 EFHLDYSKLEGRPQLPPHV 85
E L+Y +LE RP++P V
Sbjct: 265 ELKLEYKELEDRPKMPQSV 283
>U39848-4|AAA80691.1| 444|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 2, isoform a protein.
Length = 444
Score = 222 bits (542), Expect = 3e-58
Identities = 102/199 (51%), Positives = 140/199 (70%), Gaps = 1/199 (0%)
Frame = -3
Query: 678 GIQTSPEGKVTNIPDTMIPNQFGIVGLLTFIRAAESDPSLVSLALGQDLTALGLNLN-SP 502
GI T P+G+VTNIP +M+ +QFG+ GL+T++R ++ PS+VSLALG DLT LGLNLN S
Sbjct: 163 GIITHPDGEVTNIPASMLDDQFGMAGLVTYLRTVDN-PSIVSLALGYDLTTLGLNLNLSE 221
Query: 501 DNLNLTFAGPWADTPCRPQDMDYHVPPEYLINGSIREKLAPLRLGRYKEDLLFYLFYCFV 322
L + F GPWAD+P R ++D VP EY+ + IR+KL PLRL + ED+LFYLFY
Sbjct: 222 RKLYMNFGGPWADSPIRAHELDVKVPEEYMTHNHIRDKLPPLRLNKVSEDVLFYLFYNCP 281
Query: 321 GDVLQIAAAAELNNREWRYHMEEKVWISQAPGMPMVEKTSTYERGTYYFFDAHNWRKVPK 142
++ Q+AAA EL REWR+H E+VW++++ + E+T YE+G Y FD WRK+PK
Sbjct: 282 NEIYQVAAACELYAREWRFHKSEQVWLTRSQYGGVKEQTGNYEKGHYNVFDQMQWRKIPK 341
Query: 141 EFHLDYSKLEGRPQLPPHV 85
E L+Y +LE RP++P V
Sbjct: 342 ELKLEYKELEDRPKMPQSV 360
>U41993-8|AAA83449.1| 497|Caenorhabditis elegans Temporarily
assigned gene nameprotein 153, isoform a protein.
Length = 497
Score = 73.3 bits (172), Expect = 2e-13
Identities = 56/188 (29%), Positives = 87/188 (46%), Gaps = 28/188 (14%)
Frame = -3
Query: 699 HPDKTRKGIQTSPEGKVTNIPDTMIPNQFGIVGLLTFI-----RAAESDPSLVS------ 553
HP K I P+G + NIP TM+ +Q+G+ +L + RA ++ L
Sbjct: 110 HPTDVSK-IILGPDGDMNNIPPTMLSDQYGMAAMLPILDIVKNRAINANTDLTEEKLRDK 168
Query: 552 --------LALGQDLTALGLNLNSPDNLNL----TFAGPWADTPCRPQDMDY---HVPPE 418
+ +G DL LG+ + + D TFAGP+A P P +M VP
Sbjct: 169 IKNENIEMMTIGFDLNELGVPMTTQDTNQKSVWETFAGPFASEPLLPANMGLTYNQVPNV 228
Query: 417 YLINGSIREKLAPLRL--GRYKEDLLFYLFYCFVGDVLQIAAAAELNNREWRYHMEEKVW 244
Y +++ L ++ LFY+FY ++ Q+ AA EL R WRY+M+EK+W
Sbjct: 229 YYTARTLQSSFDMLHNIPDKFGVHELFYIFYNLPKELWQLNAARELQYRGWRYNMKEKLW 288
Query: 243 ISQAPGMP 220
+ + G P
Sbjct: 289 VHKKLGEP 296
>U41993-7|AAA83450.2| 733|Caenorhabditis elegans Temporarily
assigned gene nameprotein 153, isoform b protein.
Length = 733
Score = 73.3 bits (172), Expect = 2e-13
Identities = 56/188 (29%), Positives = 87/188 (46%), Gaps = 28/188 (14%)
Frame = -3
Query: 699 HPDKTRKGIQTSPEGKVTNIPDTMIPNQFGIVGLLTFI-----RAAESDPSLVS------ 553
HP K I P+G + NIP TM+ +Q+G+ +L + RA ++ L
Sbjct: 346 HPTDVSK-IILGPDGDMNNIPPTMLSDQYGMAAMLPILDIVKNRAINANTDLTEEKLRDK 404
Query: 552 --------LALGQDLTALGLNLNSPDNLNL----TFAGPWADTPCRPQDMDY---HVPPE 418
+ +G DL LG+ + + D TFAGP+A P P +M VP
Sbjct: 405 IKNENIEMMTIGFDLNELGVPMTTQDTNQKSVWETFAGPFASEPLLPANMGLTYNQVPNV 464
Query: 417 YLINGSIREKLAPLRL--GRYKEDLLFYLFYCFVGDVLQIAAAAELNNREWRYHMEEKVW 244
Y +++ L ++ LFY+FY ++ Q+ AA EL R WRY+M+EK+W
Sbjct: 465 YYTARTLQSSFDMLHNIPDKFGVHELFYIFYNLPKELWQLNAARELQYRGWRYNMKEKLW 524
Query: 243 ISQAPGMP 220
+ + G P
Sbjct: 525 VHKKLGEP 532
>Z92826-9|CAD90172.1| 701|Caenorhabditis elegans Hypothetical
protein Y56A3A.1a protein.
Length = 701
Score = 58.8 bits (136), Expect = 4e-09
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Frame = -3
Query: 366 RYKEDLLFYLFYCFVGDVLQIAAAAELNNREWRYHMEEKVWISQAPGMPMVEKTSTYERG 187
R D LF++FY G Q+ AA L WR+H + W + + T YE+G
Sbjct: 613 RLAPDTLFFIFYYMEGTRAQLLAAKALKKLSWRFHTKYLTWFQRHEEPKQI--TDDYEQG 670
Query: 186 TYYFFDAHNWRKVPKE-FHLDYSKLEGR 106
TY +FD W + KE F +Y LE +
Sbjct: 671 TYVYFDFEKWSQRKKESFTFEYKFLEDK 698
>Z92826-5|CAB07318.1| 198|Caenorhabditis elegans Hypothetical
protein Y56A3A.1b protein.
Length = 198
Score = 58.8 bits (136), Expect = 4e-09
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Frame = -3
Query: 366 RYKEDLLFYLFYCFVGDVLQIAAAAELNNREWRYHMEEKVWISQAPGMPMVEKTSTYERG 187
R D LF++FY G Q+ AA L WR+H + W + + T YE+G
Sbjct: 110 RLAPDTLFFIFYYMEGTRAQLLAAKALKKLSWRFHTKYLTWFQRHEEPKQI--TDDYEQG 167
Query: 186 TYYFFDAHNWRKVPKE-FHLDYSKLEGR 106
TY +FD W + KE F +Y LE +
Sbjct: 168 TYVYFDFEKWSQRKKESFTFEYKFLEDK 195
>AL132860-33|CAB60507.2| 701|Caenorhabditis elegans Hypothetical
protein Y56A3A.1a protein.
Length = 701
Score = 58.8 bits (136), Expect = 4e-09
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Frame = -3
Query: 366 RYKEDLLFYLFYCFVGDVLQIAAAAELNNREWRYHMEEKVWISQAPGMPMVEKTSTYERG 187
R D LF++FY G Q+ AA L WR+H + W + + T YE+G
Sbjct: 613 RLAPDTLFFIFYYMEGTRAQLLAAKALKKLSWRFHTKYLTWFQRHEEPKQI--TDDYEQG 670
Query: 186 TYYFFDAHNWRKVPKE-FHLDYSKLEGR 106
TY +FD W + KE F +Y LE +
Sbjct: 671 TYVYFDFEKWSQRKKESFTFEYKFLEDK 698
>AF101318-5|AAC69347.1| 574|Caenorhabditis elegans Hypothetical
protein Y73C8C.7 protein.
Length = 574
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 198 TLKSSRPLACRALVRSTPSPPYDIAIRDCLTLLQ 299
T K PL C L++ TP PP ++ +CL L+
Sbjct: 492 TFKEKAPLICAQLLK-TPEPPNELDDNECLVCLE 524
>U28740-6|AAA68322.4| 317|Caenorhabditis elegans Tetraspanin family
protein 11 protein.
Length = 317
Score = 28.7 bits (61), Expect = 5.0
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Frame = +3
Query: 111 PPACCNPNE-TLSAPFSNCAHRRSSRCRVRTLKSSRPLACRALVRSTPSPPYDIAIRDCL 287
PPACC P+E P+ N R S C + +S + + S + + I+ C+
Sbjct: 212 PPACCPPDEHGRLRPYCNTIMRHSHGCYAKIAESFEEVTSHFKIVSWTVVLFAL-IQGCI 270
Query: 288 TLLQPQFVKRHQRNSRTNRIIDLLYIFRVVEALV 389
T P + + S I+ +L IF +V +V
Sbjct: 271 T---PLYRESQIHFSAIFSILVVLTIFDIVLFIV 301
>L23651-7|AAM22042.1| 926|Caenorhabditis elegans Associated with
ran (nuclear import/export) function protein 2, isoform
b protein.
Length = 926
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -2
Query: 274 MAISYGGEGVDLTSARHANGREDFNVRTRHLLLLRCAQLEKGAERVS 134
++++ G+ D ARH G DF R LL + E+GAE S
Sbjct: 313 ISVNMFGKDFDSAKARHGKGNIDFGRRGDDELLSSDEEEEQGAEDAS 359
>L23651-6|AAK84496.3| 960|Caenorhabditis elegans Associated with
ran (nuclear import/export) function protein 2, isoform
a protein.
Length = 960
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -2
Query: 274 MAISYGGEGVDLTSARHANGREDFNVRTRHLLLLRCAQLEKGAERVS 134
++++ G+ D ARH G DF R LL + E+GAE S
Sbjct: 350 ISVNMFGKDFDSAKARHGKGNIDFGRRGDDELLSSDEEEEQGAEDAS 396
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,189,919
Number of Sequences: 27780
Number of extensions: 379566
Number of successful extensions: 1062
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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