Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_M01
(764 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 229 3e-61
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 226 2e-60
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 82 7e-17
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 52 1e-07
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 35 0.011
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 28 1.3
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.1
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 26 5.1
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 6.8
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 26 6.8
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 25 9.0
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 229 bits (560), Expect = 3e-61
Identities = 107/152 (70%), Positives = 123/152 (80%), Gaps = 1/152 (0%)
Frame = -3
Query: 600 EITNAXXEPAXPDGEMRPPVMASTWLAVCCT-RGDVVPKDVNAAIATIKTKRTIQFVDWC 424
EITN EP + P ++A C RGDV+P+DV AA+ +IK++RTIQFVDWC
Sbjct: 294 EITNQCFEPYNQMVKCDP--RTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWC 351
Query: 423 PTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHW 244
PTGFK+GI Y+PP VPG +AKV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHW
Sbjct: 352 PTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHW 411
Query: 243 YVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 148
YVGEGMEEGEFSEAREDLAALE+DYEEVG DS
Sbjct: 412 YVGEGMEEGEFSEAREDLAALERDYEEVGQDS 443
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 226 bits (553), Expect = 2e-60
Identities = 107/152 (70%), Positives = 122/152 (80%), Gaps = 1/152 (0%)
Frame = -3
Query: 600 EITNAXXEPAXPDGEMRPPVMASTWLAVCCT-RGDVVPKDVNAAIATIKTKRTIQFVDWC 424
EITN EP + P A ++A C RGDV+P+DV AA+ TIK KRTIQFVDWC
Sbjct: 290 EITNQCFEPYNQMVKCDP--RAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWC 347
Query: 423 PTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHW 244
PTGFK+GI +PP + G ++AKV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHW
Sbjct: 348 PTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHW 407
Query: 243 YVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 148
YVGEGMEEGEFSEAREDLAALE+DYEEVG DS
Sbjct: 408 YVGEGMEEGEFSEAREDLAALERDYEEVGQDS 439
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 82.2 bits (194), Expect = 7e-17
Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
Frame = -3
Query: 507 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 328
RG V K+V+ I +++TK + FV+W P + PP DL + + +
Sbjct: 318 RGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPK-----DL---KMSATFIG 369
Query: 327 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAR---EDLAALEKDYEEVG 157
N+T+I E + RL +F M+ ++AF+HWY GEGM+E EF+EA DL + + Y+E G
Sbjct: 370 NSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAG 429
Query: 156 MD 151
+D
Sbjct: 430 ID 431
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 51.6 bits (118), Expect = 1e-07
Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Frame = -3
Query: 507 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 328
+G+ P DV+ ++ I+ +R F+ W P +V ++ + P + ++ + ML+
Sbjct: 325 QGEADPADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGL-----MLA 379
Query: 327 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEE---GEFSEAREDLAALEKDYE 166
N T+IA + R ++D + + AF+ Y E + E EF +R+ +A L +YE
Sbjct: 380 NHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADLINEYE 436
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 35.1 bits (77), Expect = 0.011
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -1
Query: 515 AVPVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 372
A PVV P + RP++P P LS V PV+ V + PP P
Sbjct: 549 AAPVVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAP 596
Score = 30.3 bits (65), Expect = 0.31
Identities = 21/69 (30%), Positives = 27/69 (39%)
Frame = -1
Query: 575 PPXQMVKCDPPSWQVHGLLYAVPVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVST 396
PP V + PS + VP S P+ P +P PSV + V P + SV
Sbjct: 607 PPVAPVAPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQRPAVPVVPEAPSVPQ 666
Query: 395 TSHPPWCPE 369
P PE
Sbjct: 667 PPAAPVVPE 675
Score = 29.5 bits (63), Expect = 0.55
Identities = 21/69 (30%), Positives = 26/69 (37%)
Frame = -1
Query: 575 PPXQMVKCDPPSWQVHGLLYAVPVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVST 396
PP V + PS P V S P+ P +P PSV + V P + SV
Sbjct: 517 PPAAPVVPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPEAPSVPQRPAVPVVPEALSVPQ 576
Query: 395 TSHPPWCPE 369
P PE
Sbjct: 577 PPVAPVAPE 585
Score = 29.5 bits (63), Expect = 0.55
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = -1
Query: 515 AVPVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 372
A PVV P + RP++P P S PV V + PP P
Sbjct: 639 AAPVVPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQPPAVP 686
Score = 28.7 bits (61), Expect = 0.96
Identities = 21/69 (30%), Positives = 26/69 (37%)
Frame = -1
Query: 575 PPXQMVKCDPPSWQVHGLLYAVPVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVST 396
PP V + PS + VP S P+ P P PSV + V P + SV
Sbjct: 577 PPVAPVAPEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQ 636
Query: 395 TSHPPWCPE 369
P PE
Sbjct: 637 PPAAPVVPE 645
Score = 28.7 bits (61), Expect = 0.96
Identities = 22/70 (31%), Positives = 27/70 (38%)
Frame = -1
Query: 575 PPXQMVKCDPPSWQVHGLLYAVPVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVST 396
PP V + PS + P V S P+ P +P PSV + V P SV
Sbjct: 592 PPVAPVVPEAPSVPQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQ 651
Query: 395 TSHPPWCPEA 366
P PEA
Sbjct: 652 RPAVPVVPEA 661
Score = 27.1 bits (57), Expect = 2.9
Identities = 19/68 (27%), Positives = 27/68 (39%)
Frame = -1
Query: 575 PPXQMVKCDPPSWQVHGLLYAVPVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVST 396
PP V + PS + VP S P+ P +P PSV + V P + ++
Sbjct: 637 PPAAPVVPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQPPAVPVVPEAGQLNE 696
Query: 395 TSHPPWCP 372
PP P
Sbjct: 697 PVVPPLPP 704
Score = 27.1 bits (57), Expect = 2.9
Identities = 18/49 (36%), Positives = 21/49 (42%)
Frame = -1
Query: 512 VPVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEA 366
VP V S P+ P +P PSV + V P SV P PEA
Sbjct: 643 VPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQPPAVPVVPEA 691
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 28.3 bits (60), Expect = 1.3
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = -1
Query: 302 GLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWLPS--RRITKKSAWTPLKARVR 129
G+ TS TS T S S++ S+P P W P+ S+ TP+ V
Sbjct: 148 GVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSSALGTSSKTPVYVVVD 207
Query: 128 EPKSTK 111
EP+ TK
Sbjct: 208 EPRFTK 213
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 5.1
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -1
Query: 470 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 384
+LP KPS+ +++S V+P S STTS+P
Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.2 bits (55), Expect = 5.1
Identities = 26/101 (25%), Positives = 40/101 (39%)
Frame = -1
Query: 509 PVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVXXXXX 330
PVV + P T+P S P+ S + PVS + T + PP A R N
Sbjct: 988 PVVQNKPAA-TKPV--SMPAAKSKPAPMANPVSTAQQTQNRPP--APAMQARPNTTQAAA 1042
Query: 329 XXXXXXPKLGLALTTSSTSCTPSVLSCTGTSVRVWRRESSP 207
+ A T S++ PS ++ +S + S+P
Sbjct: 1043 PVTSTTTTIKQATTVSASKPAPSTVTSAASSPSNISKPSAP 1083
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.8 bits (54), Expect = 6.8
Identities = 17/50 (34%), Positives = 19/50 (38%)
Frame = -3
Query: 678 PTPIIPMSLRAIILPRRPTMNSXPSXEITNAXXEPAXPDGEMRPPVMAST 529
P + P S LP P+ N N PA P RPP AST
Sbjct: 243 PPTLPPQSTNTSQLPM-PSRNVNNLGSQVNIPPPPATPSQPPRPPTNAST 291
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 25.8 bits (54), Expect = 6.8
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +2
Query: 437 NWIVRLVLMVAMAAFTSLGTTSPRVQHTASHVLAMTGGRISPSGLAGSXHAFVISXDGXL 616
+W+++L V F +LG SP + T + V +GG ++ L GS V G +
Sbjct: 142 SWLLQLPDSVVGVTFLALGNGSPDILSTFAAVRVNSGG-MAIGELLGSAFFIVAIVAGSV 200
Query: 617 FMV 625
++
Sbjct: 201 CLI 203
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -1
Query: 473 PSLPSKPSVLSNSST--GVQPVSRSVSTTSHPPW 378
P PS+P+++SN ST G+Q V V + W
Sbjct: 531 PISPSRPALISNISTKKGIQVVGNMVYDPTRLRW 564
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,673,244
Number of Sequences: 5004
Number of extensions: 54789
Number of successful extensions: 210
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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