Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_L24
         (822 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0123 - 31821915-31822094,31822187-31822324,31822413-318228...    31   1.5  
08_02_1457 + 27260841-27260965,27261126-27261246,27263455-272635...    28   7.8  

>03_06_0123 -
           31821915-31822094,31822187-31822324,31822413-31822817,
           31822897-31823212,31823305-31823543,31823800-31823903,
           31823987-31824145,31824326-31824510,31825318-31825427,
           31826900-31826947,31827047-31827241,31827354-31827422,
           31829521-31829620,31829879-31829940
          Length = 769

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -1

Query: 369 TVVVTMLGSDESWQAMFDFCESTISQEAAGREKESSSTLSAQCRGIEGGVHPA 211
           TV    L S  +     + C+      AA R++ESS+T ++ C G + GV P+
Sbjct: 602 TVEQPALASHSTIWGAEETCDEFSFNLAASRKQESSNTSASSCPGSDSGVLPS 654


>08_02_1457 +
           27260841-27260965,27261126-27261246,27263455-27263543,
           27263776-27263860,27263970-27264074,27264446-27264527,
           27264573-27264686,27265029-27265330,27265519-27266114,
           27266216-27266376,27266489-27266592,27266697-27266856,
           27266942-27267105,27267213-27267545,27267640-27267930,
           27268276-27268359,27268430-27268563,27268665-27268892,
           27268993-27269164,27269263-27269517,27269778-27270047
          Length = 1324

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 10/36 (27%), Positives = 23/36 (63%)
 Frame = +2

Query: 110 INNLFATYIHVSYLSSFNLHYSDQG*HDVRKISCAG 217
           +N+    Y+H +Y+S ++LH+++     ++K+ C G
Sbjct: 152 VNSSTPQYLH-AYVSQYDLHHAEMTLSSLKKLICTG 186


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,836,831
Number of Sequences: 37544
Number of extensions: 308748
Number of successful extensions: 595
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)