Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_L22
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   165   8e-42
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   157   2e-39
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    46   5e-06
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    29   0.57 
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch...    26   7.1  

>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score =  165 bits (400), Expect = 8e-42
 Identities = 77/135 (57%), Positives = 87/135 (64%)
 Frame = -1

Query: 614 PPNQMVKCDPRHGKYMACCMLYRGDVVPKDVNXXXXXXXXXXXIQXVDWCPTGFKVGIXY 435
           P NQMVKCDPR G+YMA C+LYRGDV+P+DV            IQ VDWCPTGFK+GI Y
Sbjct: 302 PYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICY 361

Query: 434 QPPTVVPGGXLAKVQXAVCMLSXTTAXAEGWXXLDHKFDLMXAKXAXVXWXVXXXXXXXX 255
           +PP  VPG  +AKV  AVCMLS TT+ AE W  LDHKFDLM +K A V W V        
Sbjct: 362 EPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGE 421

Query: 254 XXXXXXXLAALEKDY 210
                  LAALE+DY
Sbjct: 422 FSEAREDLAALERDY 436



 Score = 30.3 bits (65), Expect = 0.33
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = -2

Query: 724 PRIQFPXXXXTRQLFSAEKAYHEQLSVAEIT 632
           PRI FP    +  + SA KA+HE  SV EIT
Sbjct: 267 PRIHFPLVTYS-PIVSAAKAFHESNSVQEIT 296


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  157 bits (380), Expect = 2e-39
 Identities = 74/135 (54%), Positives = 85/135 (62%)
 Frame = -1

Query: 614 PPNQMVKCDPRHGKYMACCMLYRGDVVPKDVNXXXXXXXXXXXIQXVDWCPTGFKVGIXY 435
           P NQMVKCDPR G+YMA C+LYRGDV+P+DV            IQ VDWCPTGFK+GI  
Sbjct: 298 PYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICD 357

Query: 434 QPPTVVPGGXLAKVQXAVCMLSXTTAXAEGWXXLDHKFDLMXAKXAXVXWXVXXXXXXXX 255
           +PP  + G  +AKV  AVCMLS TT+ AE W  LDHKFDLM +K A V W V        
Sbjct: 358 RPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGE 417

Query: 254 XXXXXXXLAALEKDY 210
                  LAALE+DY
Sbjct: 418 FSEAREDLAALERDY 432



 Score = 29.9 bits (64), Expect = 0.43
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = -2

Query: 724 PRIQFPXXXXTRQLFSAEKAYHEQLSVAEIT 632
           PRI FP       + SA KA+HE  SV EIT
Sbjct: 263 PRIHFPLVTYA-PIVSAAKAFHESNSVQEIT 292


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 46.4 bits (105), Expect = 5e-06
 Identities = 27/108 (25%), Positives = 44/108 (40%)
 Frame = -1

Query: 608 NQMVKCDPRHGKYMACCMLYRGDVVPKDVNXXXXXXXXXXXIQXVDWCPTGFKVGIXYQP 429
           N MV  DPRHG+Y+    L+RG V  K+V+              V+W P      +   P
Sbjct: 298 NMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVP 357

Query: 428 PTVVPGGXLAKVQXAVCMLSXTTAXAEGWXXLDHKFDLMXAKXAXVXW 285
           P          ++ +   +  +T+  E +  L  +F  M  + A + W
Sbjct: 358 P--------KDLKMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHW 397


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = -2

Query: 547 VVTSYPRM*TRPSLPSKPXVLSNXSTGVQPVSRSVSXTSHPPWCP 413
           VV   P +  RP++P  P  LS     V PV+  V     PP  P
Sbjct: 552 VVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAP 596


>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
           Hus5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 530 WVRRHHGTAYSKPCTCHDGG 589
           W R H    Y+KPC   DGG
Sbjct: 16  WRRDHPFGFYAKPCKSSDGG 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,393,225
Number of Sequences: 5004
Number of extensions: 42922
Number of successful extensions: 74
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)