Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_L20
(740 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb... 91 2e-19
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 40 3e-04
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 31 0.17
SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomy... 27 2.1
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 26 4.9
SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos... 26 4.9
SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo... 26 4.9
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce... 26 6.5
SPBP8B7.08c |||leucine carboxyl methyltransferase |Schizosacchar... 25 8.6
>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1095
Score = 91.1 bits (216), Expect = 2e-19
Identities = 44/114 (38%), Positives = 67/114 (58%), Gaps = 1/114 (0%)
Frame = -3
Query: 732 SEPEVRQAAAYGCGVLAQFGDVQFXXXXXXXXXXXXAIVAEPDARSLEKINATENAISAV 553
SEPE+RQAA+YG GV AQ G + ++ PDAR E+I ATEN A+
Sbjct: 921 SEPEIRQAASYGIGVAAQHGGELYAEICSSALPALFKMLELPDARDEEQIYATENICVAI 980
Query: 552 AKIIKYNHSQI-NRDEIITHWLTWLPVTEDTEEAPHVYALLCELASSGHGALST 394
KI ++ ++ + D+++T+W+ LPVT D ++AP+ Y L EL H A+++
Sbjct: 981 CKICRFCSQRVQDLDKVVTYWINTLPVTHDEDDAPYAYTFLAELMEQNHVAVAS 1034
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 40.3 bits (90), Expect = 3e-04
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
Frame = -3
Query: 732 SEPEVRQAAAYGCGVLAQFGDVQFXXXXXXXXXXXXAIVAEPDARSLEKINATENAISAV 553
SE EVR AAY G+L QF + R+ A +NAI +
Sbjct: 906 SEGEVRSNAAYSMGLLCQFSTEDLSSEYLNILQKLQPFFTQEVFRT-----ALDNAIGCI 960
Query: 552 AKIIKYNHSQINRDEIITHWLTWLPVTED-TEEAPHVYALL 433
+++I +N + I D+++ + LP+ ED E AP + +L
Sbjct: 961 SRLILHNQNAIPVDQVLPIVFSKLPLKEDYLENAPLYHMIL 1001
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 31.1 bits (67), Expect = 0.17
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -1
Query: 740 IRXLNRKCVKPRPTVAAC*HSLVTYSLQPPAHELYLFWPPLSQ 612
I+ L+ K K + H L+ Y L PPAH+ YL W L +
Sbjct: 508 IKRLHLKLSKGIMDIKVLTHQLMLYDLYPPAHQTYL-WKALER 549
>SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 538
Score = 27.5 bits (58), Expect = 2.1
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 324 NPCLCANGCITSTDTV 277
N CL +GCITS +TV
Sbjct: 62 NDCLACSGCITSAETV 77
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 475 HR*PCQPMRDDFIPIYLRMIVFDNFSDG 558
HR PC + DF P L+ +F + SDG
Sbjct: 359 HRQPCHVVYTDFRPTPLQHYLFPSGSDG 386
>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
5-trisphosphate3-phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 348
Score = 26.2 bits (55), Expect = 4.9
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -2
Query: 316 SMRKWLHYFDRYSQMPNYLIHVS*L*VTTTRKLFR*LCPHSNDALSTXLH 167
S ++++Y + Q PNYL V TT K F+ L N +L LH
Sbjct: 174 SQIRYVYYIEILKQFPNYLKAVEFNTGTTFFKSFKCLNIKKNSSLILSLH 223
>SPAC22F3.12c |rgs1||regulator of G-protein signaling
Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 490 QPMRDDFIPIYLRMIVFDNFSDGRYSIFSCID 585
+P DF+ ++ M++ NFS RY FS ++
Sbjct: 46 RPYSKDFLELFSTMVISTNFSRNRYR-FSYVE 76
>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 25.8 bits (54), Expect = 6.5
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -1
Query: 365 HSPKRFAPTLYQTITPVY-AQMVALLRQIQSNAELFNSCLMTLSND 231
HSPK + Q ++PVY + A LR N+E S +L +D
Sbjct: 97 HSPKSAISCVTQPVSPVYNTRAAANLRNNSINSEAALSTTSSLLDD 142
>SPBP8B7.08c |||leucine carboxyl methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 310
Score = 25.4 bits (53), Expect = 8.6
Identities = 9/42 (21%), Positives = 22/42 (52%)
Frame = -3
Query: 594 LEKINATENAISAVAKIIKYNHSQINRDEIITHWLTWLPVTE 469
L+ ++ E + + Y +S++ ++ +T TW+P+ E
Sbjct: 223 LKTLDCYETTEQQRMRFLDYGYSEVIAEDFLTIEETWIPIEE 264
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,734,263
Number of Sequences: 5004
Number of extensions: 52476
Number of successful extensions: 156
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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