Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_L20
         (740 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta...    69   3e-12
AF125965-2|AAL38961.1|  366|Caenorhabditis elegans Hypothetical ...    32   0.49 
U23514-3|AAC46542.2|  421|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AF067618-6|AAC19197.2| 1015|Caenorhabditis elegans Hypothetical ...    29   4.6  

>AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta
            family protein 3 protein.
          Length = 1092

 Score = 68.9 bits (161), Expect = 3e-12
 Identities = 45/117 (38%), Positives = 63/117 (53%), Gaps = 4/117 (3%)
 Frame = -3

Query: 726  PEVRQAAAYGCGVLA-QFGDVQ-FXXXXXXXXXXXXAIVAEPDARSLEKIN-ATENAISA 556
            PEVRQAA+YG GV+A  +  +  +            A++   DAR+ E+   ATENAISA
Sbjct: 908  PEVRQAASYGFGVMAINYHQISDYRNEILSCLEPLAAMIQREDARATEESTVATENAISA 967

Query: 555  VAKIIKYNHSQINR-DEIITHWLTWLPVTEDTEEAPHVYALLCELASSGHGALSTPD 388
             AKII           +++  +L+WLP   DTEE+P++Y  L EL      AL  P+
Sbjct: 968  FAKIIGNVPLPAEAYGKVVEMFLSWLPTYSDTEESPYIYTCLAELFDKQDAALFGPE 1024


>AF125965-2|AAL38961.1|  366|Caenorhabditis elegans Hypothetical
           protein H43I07.2 protein.
          Length = 366

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = -3

Query: 618 VAEPDARSLEKINATENAISAVAKIIKYNHSQINRDEIITHWLTWLPVTED 466
           +  P A +L ++   E    A+ KI  Y ++ + +DE++ H L  LP+  D
Sbjct: 75  IEAPIANALRRVLIAEVPTMALEKIYLYQNTSVIQDEVLCHRLGLLPLRVD 125


>U23514-3|AAC46542.2|  421|Caenorhabditis elegans Hypothetical
           protein F48E8.7a protein.
          Length = 421

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 547 FSDGRYSIFSCIDLFKRACVRLCDNGGQKRYSSCAGGCK 663
           FSD   SIF C +L+ +  +RL  +G  ++  S    CK
Sbjct: 28  FSDETISIFPCYNLYPKKSLRLSVSGNSEKLKSINLNCK 66


>AF067618-6|AAC19197.2| 1015|Caenorhabditis elegans Hypothetical
           protein F56H1.5 protein.
          Length = 1015

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = -2

Query: 70  SWNYCYNYKIVNTSLHLLKKKKK 2
           +++Y Y Y  +N+SL +LKK+K+
Sbjct: 724 AYHYPYTYSFLNSSLSMLKKRKQ 746


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,460,285
Number of Sequences: 27780
Number of extensions: 308230
Number of successful extensions: 755
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)