Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_L19
         (795 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    30   0.33 
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    29   1.0  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    26   7.1  
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    25   9.4  

>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +2

Query: 155 SSCFANESTTGSESRPAEKIRRETQRADSWV 247
           SSC  +ES    ES PA K   E    DSW+
Sbjct: 299 SSCLLDESMVTGESVPARKFPLEDNSLDSWM 329


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = -2

Query: 533 HDDLXLESIQKYMK-SASERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTD 357
           H+   +E  +K++   AS+R+ + +M   NR+I +    +P  +   +    R  H+L D
Sbjct: 318 HEAEFIEKQKKHLSIEASDRFKENSMWEKNRMITSGVSKAPGLESDYSLMEERRVHLLVD 377

Query: 356 LSNP 345
              P
Sbjct: 378 ELRP 381


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 509 IQKYMKSASERYFDKAMRHDNRLIVAAADYSPNP 408
           IQK  K + E+ F  +  +    I  A+DY  NP
Sbjct: 686 IQKLKKPSREKSFTSSSEYSLPFISPASDYQQNP 719


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -2

Query: 545 NVDLHDDLXLESIQKYMKSASERYFDKAMRHDN--RLIVAAADYS 417
           N++LH D    ++  +++ A + Y+   + H N  R ++   D S
Sbjct: 288 NIELHTDYAPHAVYNFVQLAKQGYYRNTIFHRNIARFMIQGGDPS 332


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,419,619
Number of Sequences: 5004
Number of extensions: 39720
Number of successful extensions: 87
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)