Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_L18
         (777 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    30   0.43 
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    27   3.0  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    27   4.0  
SPAP27G11.07c |||serine/threonine protein kinase |Schizosaccharo...    27   4.0  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    26   5.2  
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc...    25   9.2  

>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -3

Query: 679 RRRDDTSWGDSFHTYSVQWTPDFIALSVDGEEWARVEAPRDAL 551
           R RD   WG+  +  +   T D  A+   G EW + E   DA+
Sbjct: 378 RPRDAKIWGNVIYEATTSTTYDTAAMGEAGSEWVKNEFSTDAM 420


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = -2

Query: 440 GVPRRVYNLRGSHQAPGETALGRHPYIFGGTCPIGSHGGVSQL*SWTLSKLSPYD 276
           GVP   YN R +    G + + R P   G   P+ S   + +  S+  +K +P D
Sbjct: 31  GVPSSNYNQRENSSRSGSSTISREPSSSGTMYPMASRDSMKE--SYDKNKGTPPD 83


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 399 LVTPPEVIDPSRNSVMPPAATPSVM 473
           +VTPP  +    +S  PPAATP+ +
Sbjct: 202 IVTPPITVTAVPDSPNPPAATPATV 226


>SPAP27G11.07c |||serine/threonine protein kinase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 238

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = -1

Query: 516 CRPARRWRH 490
           CRPA+RWRH
Sbjct: 49  CRPAKRWRH 57


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 390 SRGLVTPPEVIDPSRNSVMPPA 455
           SRG V P E + PS+ + +PP+
Sbjct: 904 SRGSVPPRETLAPSKGAYVPPS 925


>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +3

Query: 312 KLADSTVGTNRTCAAKNVRMPSERCLSRGLVTPPEVIDPSRN 437
           K  + T+G  R   A+ +  P+E+ L   L+  P+  + S +
Sbjct: 200 KYGNITLGLIRALLAREILSPAEKALKAALLAEPKTAELSNS 241


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,776,151
Number of Sequences: 5004
Number of extensions: 52837
Number of successful extensions: 119
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)