Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_L18
(777 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1251 + 28749558-28749818,28749953-28750146,28750269-28750695 32 0.44
12_02_0803 + 23318429-23318552,23318688-23319877,23320724-233215... 31 1.3
08_01_0869 + 8487518-8487697,8487792-8488127,8488211-8488410,848... 31 1.3
06_03_1253 + 28761311-28761598,28761689-28761882,28762327-28762711 31 1.3
06_03_1252 + 28753584-28753883,28754693-28754886,28755192-28755597 31 1.3
04_04_1063 - 30507734-30508127,30508248-30508447,30508559-30508846 30 1.8
04_04_1064 - 30516378-30516735,30516852-30517051,30517148-30517411 29 3.1
04_04_1068 + 30552935-30553234,30553424-30553623,30553738-30554122 29 4.1
10_05_0068 + 8774712-8774787,8774812-8774852,8774895-8775743,877... 29 5.4
04_01_0470 - 6062054-6062134,6062262-6062528,6062578-6062583 29 5.4
03_01_0121 + 940338-940637,941023-941324,941417-941969,943889-94... 29 5.4
04_03_0689 + 18746735-18748296,18748401-18748485 28 7.2
06_03_1254 - 28773066-28773489,28773580-28773773,28773849-28774103 28 9.5
02_04_0443 - 22969690-22969700,22970561-22970642,22971484-229716... 28 9.5
>06_03_1251 + 28749558-28749818,28749953-28750146,28750269-28750695
Length = 293
Score = 32.3 bits (70), Expect = 0.44
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 649 SFHTYSVQWTPDFIALSVDG 590
SFHTYS+ W P + +VDG
Sbjct: 138 SFHTYSIIWNPQHVIFAVDG 157
>12_02_0803 + 23318429-23318552,23318688-23319877,23320724-23321528,
23321938-23322417,23322535-23322815,23323207-23323302,
23323423-23323548,23324100-23325890
Length = 1630
Score = 30.7 bits (66), Expect = 1.3
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -3
Query: 433 RDGSITSGGVTKPLERQRSEGIRTFLAA 350
+DG I SGG T+P+E E +R+ +++
Sbjct: 1322 KDGDIQSGGATRPMEISNEESVRSSVSS 1349
>08_01_0869 +
8487518-8487697,8487792-8488127,8488211-8488410,
8488586-8488973
Length = 367
Score = 30.7 bits (66), Expect = 1.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 652 DSFHTYSVQWTPDFIALSVDG 590
+ FHTY++ W P I + VDG
Sbjct: 224 EDFHTYTIIWNPQMILILVDG 244
>06_03_1253 + 28761311-28761598,28761689-28761882,28762327-28762711
Length = 288
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = -3
Query: 646 FHTYSVQWTPDFIALSVDG 590
FHTYSV W P I VDG
Sbjct: 148 FHTYSVLWNPSHILFYVDG 166
>06_03_1252 + 28753584-28753883,28754693-28754886,28755192-28755597
Length = 299
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Frame = -3
Query: 682 KRRRDDTSWGD---SFHTYSVQWTPDFIALSVDG 590
+R + W D FHTYS+ W P I L +DG
Sbjct: 137 EREQQFVLWFDPTADFHTYSILWNPHNIILYIDG 170
>04_04_1063 - 30507734-30508127,30508248-30508447,30508559-30508846
Length = 293
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = -3
Query: 646 FHTYSVQWTPDFIALSVD 593
FHTYSV W PD I + VD
Sbjct: 150 FHTYSVIWNPDEILILVD 167
>04_04_1064 - 30516378-30516735,30516852-30517051,30517148-30517411
Length = 273
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 646 FHTYSVQWTPDFIALSVDG 590
FHTYS+ WT I + VDG
Sbjct: 142 FHTYSIVWTSQHILVLVDG 160
>04_04_1068 + 30552935-30553234,30553424-30553623,30553738-30554122
Length = 294
Score = 29.1 bits (62), Expect = 4.1
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3
Query: 646 FHTYSVQWTPDFIALSVDGE 587
+HTYS+ W P I + VDG+
Sbjct: 154 YHTYSIVWNPKRILILVDGK 173
>10_05_0068 +
8774712-8774787,8774812-8774852,8774895-8775743,
8776210-8776582,8776814-8777484
Length = 669
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = -3
Query: 715 DLECRENFLSTKRRRDDTSWGDSFHTYSVQWTPDFIA---LSVDGEEWARVEAPRDALPA 545
DL+ E +KR+R S+GD F Y + TP I+ S D + W EA R + +
Sbjct: 321 DLDVSEAPRRSKRQRTAKSFGDDFTVYLMDDTPKSISEAYASPDADYWK--EAVRSEMDS 378
Query: 544 V 542
+
Sbjct: 379 I 379
>04_01_0470 - 6062054-6062134,6062262-6062528,6062578-6062583
Length = 117
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 3/68 (4%)
Frame = +2
Query: 407 SPGGYRPVAELRYASCRHA*RYVEVVIEWR---HLRAGLQQVPRGVRADSRQGVPWRLHS 577
SP +RP ++ + R+ + R + PR A SR G PW H
Sbjct: 37 SPNSWRPPHMATISAMSESLRFTNATDSLNSGCNARVTWEMAPRETLAASRSGSPWSAHD 96
Query: 578 RPLLAVHR 601
L HR
Sbjct: 97 EVSLGDHR 104
>03_01_0121 +
940338-940637,941023-941324,941417-941969,943889-944848
Length = 704
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 652 DSFHTYSVQWTPDFIALSVDGEEWARVE 569
D FH Y++ W D I +DGE R E
Sbjct: 533 DGFHHYAIAWGADAIEWRIDGELIRREE 560
>04_03_0689 + 18746735-18748296,18748401-18748485
Length = 548
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 723 PIMIWSAARTFSPQKDAETTRRGATVF 643
P++IW AR+ +PQ+ E R+G F
Sbjct: 288 PLIIWENARSAAPQEGFEVKRKGDKEF 314
>06_03_1254 - 28773066-28773489,28773580-28773773,28773849-28774103
Length = 290
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -3
Query: 646 FHTYSVQWTPDFIALSVD 593
FHTYS+ W P I VD
Sbjct: 137 FHTYSILWNPKHIIFMVD 154
>02_04_0443 -
22969690-22969700,22970561-22970642,22971484-22971601,
22973513-22973740,22973948-22974231
Length = 240
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = -1
Query: 576 EWRRHGTPCRLSARTPRGTCCRPARRWRHSMTTST*R*AWRQEA 445
+WRRHG RL+ G R W H R AWR+EA
Sbjct: 120 DWRRHGGLRRLAEGVADG------RTWLHGSDWRGRRPAWRREA 157
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,641,592
Number of Sequences: 37544
Number of extensions: 429425
Number of successful extensions: 1330
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1328
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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