Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_L15
         (836 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   3.3  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    26   5.8  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    26   5.8  

>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 356 VTATTKPRLCYQIFQYFNLKRGIVF 282
           + + T P +CYQI  YFN+ R + F
Sbjct: 511 LNSVTSP-VCYQILTYFNMYRPLCF 534


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 550 KQLNXRKKFNFPTKNPXALKTRQNNIYNPSTT*D 651
           +QLN    F  P +NP   K+R    + PS T D
Sbjct: 135 QQLNNNNGFQPPPQNPGISKSRIAQYHQPSQTYD 168


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 348 CRNTIYMSQSNIITVNNHGKLKALEDAELFLFIHDITIFHDK 473
           C NTIY ++  +   +N      LED E +L   D  I H K
Sbjct: 58  CPNTIYYAKYQVQRKDNEDAASLLEDKEAYLRNQD-CIVHAK 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,727,385
Number of Sequences: 5004
Number of extensions: 48348
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)