Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_L14
(736 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 179 3e-46
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 178 6e-46
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 64 1e-11
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 40 3e-04
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 31 0.23
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 28 1.2
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo... 28 1.6
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 27 3.7
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 4.8
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa... 26 6.4
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 26 6.4
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 25 8.5
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 25 8.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 8.5
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 25 8.5
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 179 bits (436), Expect = 3e-46
Identities = 99/194 (51%), Positives = 119/194 (61%), Gaps = 1/194 (0%)
Frame = -3
Query: 710 LNXTSPEFQTNLVPYPRIHFPLVTYAPVISAEKAXP*TAFRRRDHKRMLRARQTRW*NAT 531
LN EFQTNLVPYPRIHFPLVTYAP++SA KA + + + +
Sbjct: 248 LNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEP-YNQMVKCD 306
Query: 530 PVMASTWLAVCCTVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEA 351
P A ++A C + ++ + + + P + PP E
Sbjct: 307 P-RAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEG 365
Query: 350 TWX-KVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 174
+ KV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDL
Sbjct: 366 SEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDL 425
Query: 173 AALEKDYEEVGMDS 132
AALE+DYEEVG DS
Sbjct: 426 AALERDYEEVGQDS 439
Score = 119 bits (287), Expect = 4e-28
Identities = 49/73 (67%), Positives = 60/73 (82%)
Frame = -2
Query: 558 PPNQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINY 379
P NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ TIK KRTIQFVDWCPTGFK+GI
Sbjct: 298 PYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICD 357
Query: 378 QPPTVVPGGDLVQ 340
+PP + G ++ +
Sbjct: 358 RPPQHIEGSEIAK 370
Score = 29.5 bits (63), Expect = 0.52
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = -1
Query: 604 HEQLSVAEITNACFEP 557
HE SV EITN CFEP
Sbjct: 283 HESNSVQEITNQCFEP 298
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 178 bits (434), Expect = 6e-46
Identities = 99/194 (51%), Positives = 118/194 (60%), Gaps = 1/194 (0%)
Frame = -3
Query: 710 LNXTSPEFQTNLVPYPRIHFPLVTYAPVISAEKAXP*TAFRRRDHKRMLRARQTRW*NAT 531
LN EFQTNLVPYPRIHFPLVTY+P++SA KA + + + +
Sbjct: 252 LNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEP-YNQMVKCD 310
Query: 530 PVMASTWLAVCCTVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPW-CPE 354
P ++A C + ++ S S + P + PP P
Sbjct: 311 P-RTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPG 369
Query: 353 ATWXKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 174
+ KV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDL
Sbjct: 370 SGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDL 429
Query: 173 AALEKDYEEVGMDS 132
AALE+DYEEVG DS
Sbjct: 430 AALERDYEEVGQDS 443
Score = 124 bits (298), Expect = 2e-29
Identities = 50/73 (68%), Positives = 62/73 (84%)
Frame = -2
Query: 558 PPNQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINY 379
P NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ +IK++RTIQFVDWCPTGFK+GI Y
Sbjct: 302 PYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICY 361
Query: 378 QPPTVVPGGDLVQ 340
+PP VPG + +
Sbjct: 362 EPPQHVPGSGIAK 374
Score = 29.5 bits (63), Expect = 0.52
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = -1
Query: 604 HEQLSVAEITNACFEP 557
HE SV EITN CFEP
Sbjct: 287 HESNSVQEITNQCFEP 302
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 64.5 bits (150), Expect = 1e-11
Identities = 28/71 (39%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Frame = -3
Query: 338 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAR---EDLAA 168
++ + + N+T+I E + RL +F M+ ++AF+HWY GEGM+E EF+EA DL +
Sbjct: 361 LKMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
Query: 167 LEKDYEEVGMD 135
+ Y+E G+D
Sbjct: 421 EYQQYQEAGID 431
Score = 57.2 bits (132), Expect = 2e-09
Identities = 24/61 (39%), Positives = 35/61 (57%)
Frame = -2
Query: 552 NQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQP 373
N MV DPRHG+Y+ L+RG V K+V+ I +++TK + FV+W P + P
Sbjct: 298 NMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVP 357
Query: 372 P 370
P
Sbjct: 358 P 358
Score = 32.3 bits (70), Expect = 0.074
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -3
Query: 728 FEIRRXLNXTSPEFQTNLVPYPRIHFPLVTYAPV 627
F LN + N+VP+PR+HF +V +AP+
Sbjct: 240 FRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPL 273
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 40.3 bits (90), Expect = 3e-04
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = -2
Query: 558 PPNQMVKCDP-RHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGIN 382
P NQMV +P + +++ + +G+ P DV+ ++ I+ +R F+ W P +V ++
Sbjct: 302 PKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALS 361
Query: 381 YQPPTV 364
+ P +
Sbjct: 362 KKSPYI 367
Score = 38.7 bits (86), Expect = 8e-04
Identities = 45/182 (24%), Positives = 76/182 (41%), Gaps = 5/182 (2%)
Frame = -3
Query: 680 NLVPYPRIHFPLVTYAPVIS--AEKAXP*TAFRRRDHKRMLRARQTRW*NATPVMASTWL 507
+L+P PR HF L +Y P + E+A D R L + + + P S ++
Sbjct: 259 SLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVMRRLLLPKNQMVSVNPSKKSCFI 318
Query: 506 AVCCTVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEATWXKVQRA 327
++ + SL S P S V+ + P+ T +V +
Sbjct: 319 SILDIIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYI--KTNHRV--S 374
Query: 326 VCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEE---GEFSEAREDLAALEKD 156
ML+N T+IA + R ++D + + AF+ Y E + E EF +R+ +A L +
Sbjct: 375 GLMLANHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADLINE 434
Query: 155 YE 150
YE
Sbjct: 435 YE 436
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 30.7 bits (66), Expect = 0.23
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -3
Query: 491 VVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 357
VV P + RP++P P LS V PV+ V + PP P
Sbjct: 552 VVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAP 596
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 28.3 bits (60), Expect = 1.2
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = -1
Query: 286 GLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWLPS--RRITKKSAWTPLKARVR 113
G+ TS TS T S S++ S+P P W P+ S+ TP+ V
Sbjct: 148 GVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSSALGTSSKTPVYVVVD 207
Query: 112 EPKSTK 95
EP+ TK
Sbjct: 208 EPRFTK 213
>SPAC25H1.06 |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 688 SRLTWCLTPVSTSHWSRTRQSSLPRRPXHEQLSVA 584
SR T CLTPV H+ + + + P H L +A
Sbjct: 216 SRDTRCLTPVKDFHYDDSPVNDVEYHPHHTNLYIA 250
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 26.6 bits (56), Expect = 3.7
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -2
Query: 600 NSFPSPRSQTHASSPPNQMVKCDPRH 523
N+ PS + ++ S+ PNQ +K P+H
Sbjct: 234 NAPPSIPANSNNSASPNQRIKASPKH 259
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 4.8
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -3
Query: 455 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 369
+LP KPS+ +++S V+P S STTS+P
Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36
>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 25.8 bits (54), Expect = 6.4
Identities = 15/48 (31%), Positives = 18/48 (37%)
Frame = +3
Query: 492 GTAYSKPCTCHDGGRISPSGLAGSKHAFVISATESCSWXGLLGRDDWR 635
G Y + C G S SGL G+ A + S G G WR
Sbjct: 146 GAWYKESELCKRAGIFSASGLVGTMFAGYLQTAVHSSLNGKGGLSGWR 193
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 25.8 bits (54), Expect = 6.4
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +3
Query: 474 WVRRHHGTAYSKPCTCHDGG 533
W R H Y+KPC DGG
Sbjct: 16 WRRDHPFGFYAKPCKSSDGG 35
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2244
Score = 25.4 bits (53), Expect = 8.5
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 592 SVAEITNACFEPAKPDGEMRPPSWQV 515
SV ++T ACFEP+ ++ P W +
Sbjct: 800 SVTKVTCACFEPSLDYVVVKIPRWDL 825
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 8.5
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -3
Query: 458 PSLPSKPSVLSNSST--GVQPVSRSVSTTSHPPW 363
P PS+P+++SN ST G+Q V V + W
Sbjct: 531 PISPSRPALISNISTKKGIQVVGNMVYDPTRLRW 564
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.4 bits (53), Expect = 8.5
Identities = 17/56 (30%), Positives = 23/56 (41%)
Frame = -3
Query: 536 ATPVMASTWLAVCCTVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHP 369
+TPV ++ CT TS P T + S P +N +T S TS P
Sbjct: 437 STPVTSTPLATTNCTTSTSVPY--TSTPVTSTPLTTTNCTTSTSIPYTSTPVTSTP 490
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 25.4 bits (53), Expect = 8.5
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = -3
Query: 644 VTYAPVISAEKAXP*TAFRRRDHKRMLRARQTRW*NATPVMASTW 510
+++A S+E P F D LR + TP+ A+TW
Sbjct: 152 ISFADPKSSENLLPILQFDELDVSAKLREGLKNYKEPTPIQAATW 196
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,882,240
Number of Sequences: 5004
Number of extensions: 61650
Number of successful extensions: 237
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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