Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_L13
         (801 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF541949-2|AAN34652.1|  826|Drosophila melanogaster pol protein ...    29   5.6  
AF420242-1|AAL16060.1|  826|Drosophila melanogaster RNA-directed...    29   5.6  
BT015258-1|AAT94487.1|  928|Drosophila melanogaster LP04418p pro...    29   9.8  
AY061294-1|AAL28842.1|  422|Drosophila melanogaster LD20624p pro...    29   9.8  
AE014297-4112|AAN14110.1|  168|Drosophila melanogaster CG5938-PD...    29   9.8  
AE014297-4111|AAF56693.1|  168|Drosophila melanogaster CG5938-PC...    29   9.8  
AE014297-4110|AAN14109.1|  168|Drosophila melanogaster CG5938-PB...    29   9.8  
AE014297-4109|AAN14108.1|  168|Drosophila melanogaster CG5938-PA...    29   9.8  
AE014296-3098|AAF49198.3|  928|Drosophila melanogaster CG11614-P...    29   9.8  

>AF541949-2|AAN34652.1|  826|Drosophila melanogaster pol protein
           protein.
          Length = 826

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = -1

Query: 708 VYNVNSDSNXXEGLTN*SV-KXVLIRPSVCVCLVKRRKSFLSFGEPESLYTQT*TETGHF 532
           + NV S  N  E +TN  V K V +R +  +CL+KR    ++  + + LYT    + G F
Sbjct: 363 IQNV-SKPNVHEVITNDEVRKVVTLRITESICLLKRGNKVIARIDVDDLYTNGIFDLGQF 421


>AF420242-1|AAL16060.1|  826|Drosophila melanogaster RNA-directed
           DNA polymerase protein.
          Length = 826

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = -1

Query: 708 VYNVNSDSNXXEGLTN*SV-KXVLIRPSVCVCLVKRRKSFLSFGEPESLYTQT*TETGHF 532
           + NV S  N  E +TN  V K V +R +  +CL+KR    ++  + + LYT    + G F
Sbjct: 363 IQNV-SKPNVHEVITNDEVRKVVTLRITESICLLKRGNKVIARIDVDDLYTNGIFDLGQF 421


>BT015258-1|AAT94487.1|  928|Drosophila melanogaster LP04418p
           protein.
          Length = 928

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +2

Query: 77  SLSSHYNKQYNQYK*FSIRK-IECWCSSMNRD 169
           SL+ H ++Q NQ +    RK  ECW S++NR+
Sbjct: 521 SLTPHQHQQQNQQQQQQQRKSAECWKSALNRN 552


>AY061294-1|AAL28842.1|  422|Drosophila melanogaster LD20624p
           protein.
          Length = 422

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +2

Query: 77  SLSSHYNKQYNQYK*FSIRK-IECWCSSMNRD 169
           SL+ H ++Q NQ +    RK  ECW S++NR+
Sbjct: 15  SLTPHQHQQQNQQQQQQQRKSAECWKSALNRN 46


>AE014297-4112|AAN14110.1|  168|Drosophila melanogaster CG5938-PD,
           isoform D protein.
          Length = 168

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 563 ILKPKLRLDILGLLEHCVSCCCQLFCN 483
           +LK  L +++  L   CV CCC L C+
Sbjct: 77  VLKKSLPVNVKWLFCGCVCCCCTLGCS 103


>AE014297-4111|AAF56693.1|  168|Drosophila melanogaster CG5938-PC,
           isoform C protein.
          Length = 168

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 563 ILKPKLRLDILGLLEHCVSCCCQLFCN 483
           +LK  L +++  L   CV CCC L C+
Sbjct: 77  VLKKSLPVNVKWLFCGCVCCCCTLGCS 103


>AE014297-4110|AAN14109.1|  168|Drosophila melanogaster CG5938-PB,
           isoform B protein.
          Length = 168

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 563 ILKPKLRLDILGLLEHCVSCCCQLFCN 483
           +LK  L +++  L   CV CCC L C+
Sbjct: 77  VLKKSLPVNVKWLFCGCVCCCCTLGCS 103


>AE014297-4109|AAN14108.1|  168|Drosophila melanogaster CG5938-PA,
           isoform A protein.
          Length = 168

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 563 ILKPKLRLDILGLLEHCVSCCCQLFCN 483
           +LK  L +++  L   CV CCC L C+
Sbjct: 77  VLKKSLPVNVKWLFCGCVCCCCTLGCS 103


>AE014296-3098|AAF49198.3|  928|Drosophila melanogaster CG11614-PA
           protein.
          Length = 928

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +2

Query: 77  SLSSHYNKQYNQYK*FSIRK-IECWCSSMNRD 169
           SL+ H ++Q NQ +    RK  ECW S++NR+
Sbjct: 521 SLTPHQHQQQNQQQQQQQRKSAECWKSALNRN 552


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,026,293
Number of Sequences: 53049
Number of extensions: 574584
Number of successful extensions: 823
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3736869864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)