Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_L12
         (780 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    32   0.080
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    31   0.14 
SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosacch...    27   3.0  
SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|...    26   7.0  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   7.0  
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce...    26   7.0  

>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 32.3 bits (70), Expect = 0.080
 Identities = 18/83 (21%), Positives = 39/83 (46%)
 Frame = -1

Query: 612  KLREQLQGVEPPVNRTEDNFDAAAKYHVSANVEYARYYVSFIIQFQFHRALCQLAGEHAA 433
            KL E +Q +    ++       A +  +  + +Y ++Y+  ++QF+    L +L G+  +
Sbjct: 897  KLEENVQCISDRFSKGMSGMGYAGEVRLGKSDDYDKWYIDILVQFREEEGLQKLTGQRQS 956

Query: 432  GDPNKKLVDCDIYQSVAAGNALA 364
            G   ++ V   +Y     G A+A
Sbjct: 957  G--GERSVSTIMYLLSLQGLAIA 977


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = -1

Query: 648 KTLPEDYNCHYWKLREQLQGVEPPVNRTEDNFDAAAKYHVSANVEYARYYVSFIIQF-QF 472
           +TL  +YN H W     +  ++ P+N    N D +    V+A  +   +   F  +F Q+
Sbjct: 645 ETLKPEYNPHSWNSNASVIFLDQPINTGFSNGDDSVLDTVTAGKDVYAFLNLFFAKFPQY 704

Query: 471 HRALCQLAGEHAAG 430
                 +AGE  AG
Sbjct: 705 AHLDFHIAGESYAG 718


>SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 659 TPYRNRSRVYA-NGRNAXLSIPIFIKLIDLXSVRPRASPG 775
           TP R RS + A +G N  +++P F   I L +V+P  + G
Sbjct: 162 TPERIRSLLIAESGCNDGMAVPFFYFAIKLLTVKPSRNAG 201


>SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 464

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -1

Query: 699 LPFAYTLDLFRYGVFRRKTLPEDYNCHYWKLRE-QLQGVEPPVNR 568
           +P AY  +  RYG  RR+T+P     H  +  + QLQ  + P N+
Sbjct: 133 VPLAYCNEKDRYGSQRRETVPLKSALHELRDEQVQLQCRQAPSNQ 177


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
 Frame = -1

Query: 264 PAAPRLAAGG----EPADRRAHRLGTDQHGVLHAEPIVGAKREGAGVESSDA 121
           P APR +AG      PA  +   LG   +    A PI  A   G G ++SDA
Sbjct: 329 PVAPRPSAGAGGANPPAASQPGLLGGSSNS---AGPIAAATAAGVGADASDA 377


>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 702 FLPFAYTLDLFRYGVFRRKTLP 637
           FL   +TL L +YG F R TLP
Sbjct: 329 FLMDDFTLSLTQYGAFYRGTLP 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,578,092
Number of Sequences: 5004
Number of extensions: 45451
Number of successful extensions: 169
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)