Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_L11
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce...    55   1e-08
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    33   0.068
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po...    28   1.5  
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo...    27   4.5  

>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 760

 Score = 55.2 bits (127), Expect = 1e-08
 Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 7/96 (7%)
 Frame = -2

Query: 440 RLRLSDVVEKEDVXEAIRLVEMSKQSLQHVEEXVQRGITSTDRIFAIVRDLA-------G 282
           RLR S+ VE  DV EA+RL+ +SK SL    +      T T +I+ I+RD+        G
Sbjct: 644 RLRFSNRVEIGDVDEALRLMSVSKSSLYDDLDPSSHDTTITSKIYKIIRDMLNSIPDVEG 703

Query: 281 SNKTVKVADVIERCVDKGFKPDQVDACIEEYENLNV 174
           + +++ +  + ER + KGF  D +   I+EY +L V
Sbjct: 704 NERSLTLRAIRERVLAKGFTEDHLINTIQEYTDLGV 739


>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 32.7 bits (71), Expect = 0.068
 Identities = 21/53 (39%), Positives = 26/53 (49%)
 Frame = -1

Query: 363 PTTRGRXRSEGYNVNGPYIRDSARPGRLQQDRQSRRCHREVRRQRIQTRSGGR 205
           P  R R R + Y   G Y RD+ RPGR  + R + R     R  R + R GGR
Sbjct: 189 PPARRRYRDD-YRRGGDYRRDAYRPGRDDERRYAPRGEYR-RNNRDEYRRGGR 239


>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 449

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 290 LAGSNKTVKVADVIERCVDKGFKPDQVDACIEEYENLNV 174
           LA    T KV DV+E   D   + +++DA I+ Y   N+
Sbjct: 347 LAQMGGTEKVEDVLENVNDTLARSEEIDATIQTYNPQNI 385


>SPCC576.10c |rpt3||19S proteasome regulatory subunit
           Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 389

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 23/83 (27%), Positives = 39/83 (46%)
 Frame = -2

Query: 398 EAIRLVEMSKQSLQHVEEXVQRGITSTDRIFAIVRDLAGSNKTVKVADVIERCVDKGFKP 219
           E IR  E  K+ +Q V   + + + + D+  AIV    GSN  V++   ++R   +  KP
Sbjct: 40  ELIRAQEEVKR-IQSVPLVIGQFLEAIDQNTAIVGSTTGSNYVVRILSTLDR---ELLKP 95

Query: 218 DQVDACIEEYENLNVWQVKPGAD 150
                 ++ + N  V  + P AD
Sbjct: 96  -SASVALQRHSNALVDILPPEAD 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,484,540
Number of Sequences: 5004
Number of extensions: 41607
Number of successful extensions: 122
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)