Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_L11
(855 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0768 - 22988119-22988223,22988337-22988558,22988645-229888... 72 5e-13
07_01_0586 - 4354613-4354996,4355537-4355662,4355752-4355827,435... 32 0.51
11_06_0621 + 25587476-25587604,25588230-25588423,25588800-255888... 31 0.89
02_05_0114 + 25958834-25961296 31 0.89
01_05_0265 + 20188160-20188211,20188291-20189019,20189103-201892... 31 1.2
05_01_0334 - 2642998-2643063,2643125-2643169,2643552-2643617,264... 29 3.6
03_02_0232 + 6614784-6614882,6616145-6616477,6616708-6616967,661... 29 4.7
09_01_0019 + 403078-404211 29 6.2
07_01_0010 + 72162-74303,74470-74545,75971-76043,76496-76540,779... 29 6.2
06_02_0233 + 13315579-13316046 28 8.3
06_01_0005 - 125809-126339 28 8.3
03_06_0741 + 35893538-35895600,35896274-35896474,35896701-358968... 28 8.3
>12_02_0768 -
22988119-22988223,22988337-22988558,22988645-22988810,
22989176-22989181,22989281-22989453,22989737-22989928,
22990034-22990211,22990302-22990444,22990666-22990755,
22990869-22990991,22991391-22991568,22992213-22992442,
22992557-22992616,22992731-22992798,22992908-22992953
Length = 659
Score = 72.1 bits (169), Expect = 5e-13
Identities = 37/96 (38%), Positives = 59/96 (61%), Gaps = 2/96 (2%)
Frame = -2
Query: 440 RLRLSDVVEKEDVXEAIRLVEMSKQSLQHVEEXVQRGITSTDRIFAIVRDLAGSNKT--V 267
RLR S+ V + DV EA+RL++MSK SL + ++ + G+ + I++I+RD A + V
Sbjct: 555 RLRFSETVAQSDVDEALRLMQMSKYSL-YSDDRQRSGLDAISDIYSILRDEAARTNSMDV 613
Query: 266 KVADVIERCVDKGFKPDQVDACIEEYENLNVWQVKP 159
+ A + KG+ Q+ C+EEY +LNVWQ+ P
Sbjct: 614 RYAHALNLISRKGYSEAQLKECLEEYASLNVWQIHP 649
>07_01_0586 -
4354613-4354996,4355537-4355662,4355752-4355827,
4356444-4356651,4356813-4356906,4357430-4357504,
4358200-4358622
Length = 461
Score = 32.3 bits (70), Expect = 0.51
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = -2
Query: 446 SPRLRLSDVVEKEDVXEAIRLVEMSKQSLQHVEEXVQRGITSTDRIFAIVRDLAGSNKTV 267
SP ++ D VEK D + ++L + SLQH++ G S++ A L +N+ V
Sbjct: 397 SPAFQIVDSVEKIDPTDPVQLQQQQMASLQHLQNRACGGGASSNEYTAWGSSLMDANELV 456
Query: 266 KV 261
+
Sbjct: 457 NM 458
>11_06_0621 + 25587476-25587604,25588230-25588423,25588800-25588874,
25589434-25591852
Length = 938
Score = 31.5 bits (68), Expect = 0.89
Identities = 12/48 (25%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -2
Query: 350 EEXVQRGITSTDRIF-AIVRDLAGSNKTVKVADVIERCVDKGFKPDQV 210
+E +Q+G+T + A++ + K D+++ +DKG +PD++
Sbjct: 872 DEMLQKGLTPDAYAYTALINGYCSQGEISKAEDLLQEMIDKGIEPDEL 919
>02_05_0114 + 25958834-25961296
Length = 820
Score = 31.5 bits (68), Expect = 0.89
Identities = 12/48 (25%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -2
Query: 350 EEXVQRGITSTDRIF-AIVRDLAGSNKTVKVADVIERCVDKGFKPDQV 210
+E +Q+G+T + A++ + K D+++ +DKG +PD++
Sbjct: 754 DEMLQKGLTPDAYAYTALINGYCSQGEISKAEDLLQEMIDKGIEPDEL 801
>01_05_0265 +
20188160-20188211,20188291-20189019,20189103-20189231,
20189857-20189938,20190034-20190166,20190269-20190340,
20190478-20190573,20190651-20190764,20190838-20191050,
20191144-20191242,20191328-20191488,20191589-20191685,
20191828-20191989,20192068-20192148,20192242-20192320,
20192414-20192550,20192638-20192688,20192776-20192844,
20193583-20193700,20194142-20194197
Length = 909
Score = 31.1 bits (67), Expect = 1.2
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = -2
Query: 440 RLRLSDVVEKEDVXEAIRLVEMSKQ 366
R+R S++VE +DV EA RL+E++ Q
Sbjct: 734 RMRFSEMVEVQDVVEAFRLLEVAMQ 758
>05_01_0334 -
2642998-2643063,2643125-2643169,2643552-2643617,
2643625-2643730,2643770-2644349,2645780-2645871,
2645969-2646035,2646126-2646231,2646628-2646708,
2646789-2647058,2647158-2648788,2648834-2649385,
2650602-2651324,2651451-2651526
Length = 1486
Score = 29.5 bits (63), Expect = 3.6
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
Frame = -2
Query: 332 GITSTDRIFAIVRDLAGSNKTVKVA--DVIERCVDKGFKPDQ-----VDACIEEYENLNV 174
G+++ +R ++ D+ GSN VK A D + VD D+ +A ++ E L V
Sbjct: 223 GLSNDER--EVIFDMGGSNTRVKGALEDYTKNLVDSDASTDEEGDTVCEASEQKCEALTV 280
Query: 173 WQVKPGADQDNVH 135
++ G +QD++H
Sbjct: 281 NSLQQGKEQDSIH 293
>03_02_0232 + 6614784-6614882,6616145-6616477,6616708-6616967,
6617328-6617469,6617567-6617938,6618056-6618187,
6618907-6619035,6619125-6621188
Length = 1176
Score = 29.1 bits (62), Expect = 4.7
Identities = 22/73 (30%), Positives = 33/73 (45%)
Frame = -2
Query: 365 SLQHVEEXVQRGITSTDRIFAIVRDLAGSNKTVKVADVIERCVDKGFKPDQVDACIEEYE 186
S QH E S +R+ +I + A S KTV ++E C KGF+ Q A +
Sbjct: 898 SAQHQESSSSDSEESPERVNSI--EEAPSTKTVS-RSLLEACAGKGFREYQPKAMHRPHN 954
Query: 185 NLNVWQVKPGADQ 147
+ + + P DQ
Sbjct: 955 DRLGFNIPPFQDQ 967
>09_01_0019 + 403078-404211
Length = 377
Score = 28.7 bits (61), Expect = 6.2
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = -1
Query: 348 RXRSEGYNVNGPYIRDSARPGRLQQDRQSRRCHREVRRQRIQTRSGGRLHRRIRELER 175
R R E + + D R + ++DR+ RR HR + SGG RR R +R
Sbjct: 257 RKRHERSDEDSESDSDKKRHRKSRKDRKRRRSHRRSDDTSDEDESGGEDRRRRRHRKR 314
>07_01_0010 +
72162-74303,74470-74545,75971-76043,76496-76540,
77916-78116,78463-78541,78637-78678,78788-78847,
79087-80484,80777-80902,81037-81300
Length = 1501
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = -2
Query: 425 DVVEKEDVXEAIRLVEMSKQSLQHVEEXVQRGITSTDRIF-AIVRDLAGSNKTVKVADVI 249
DVV + + M ++++ ++ + +G D + I+ + + +++
Sbjct: 254 DVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELL 313
Query: 248 ERCVDKGFKPDQVDAC 201
+ V KGF PDQV C
Sbjct: 314 KDAVFKGFVPDQVTYC 329
>06_02_0233 + 13315579-13316046
Length = 155
Score = 28.3 bits (60), Expect = 8.3
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = -1
Query: 357 TRGRXRSEGYNVNGPYIRDSARPGRLQQDRQSRRCHREVRRQRIQTRSGGRLHR-RIREL 181
T R R + G + GRL +R+SR R RR+R + R R R R RE+
Sbjct: 57 TASRGRGRRPHPAGTAVFGGGVGGRLSAERRSRWQRRPARRERRRWRPAWRERRSRWREV 116
Query: 180 ERVASEAR 157
+A EAR
Sbjct: 117 -GLAREAR 123
>06_01_0005 - 125809-126339
Length = 176
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = -1
Query: 306 RDSAR-PGRLQQDRQSRRCHREVRRQRIQTRSGGRLHRR 193
RD R P R R RCHR RR+ + R GG R
Sbjct: 138 RDPGRVPARGGDPRDQWRCHRRWRRRARRGRGGGTTRSR 176
>03_06_0741 +
35893538-35895600,35896274-35896474,35896701-35896814,
35897570-35897649,35897772-35897896,35898008-35898079
Length = 884
Score = 28.3 bits (60), Expect = 8.3
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -2
Query: 368 QSLQHVEEXVQRGITSTDRIFAIVRDLAGSNKTVKVA-DVIERCVDKGFKPD 216
++LQ E V+ GI + IV G ++ A DV+E + KG KPD
Sbjct: 440 RALQLFAEMVESGIEPNIMSYTIVIQCLGKAGRIQEAVDVLEAGMAKGLKPD 491
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,450,208
Number of Sequences: 37544
Number of extensions: 332127
Number of successful extensions: 949
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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