Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_L11
         (855 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016427-3|AAB65356.1|  730|Caenorhabditis elegans Yeast mcm (li...    64   1e-10
Z79754-7|CAB02096.2|  387|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U40424-1|AAA81456.2|  461|Caenorhabditis elegans Twik family of ...    30   1.8  
AF083650-1|AAC32861.1|  461|Caenorhabditis elegans potassium cha...    30   1.8  
Z49126-1|CAA88938.2|  605|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z92817-3|CAJ43914.1|  511|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z81502-5|CAB04108.2|  672|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z93375-4|CAB07562.2|  647|Caenorhabditis elegans Hypothetical pr...    29   5.6  
Z92817-2|CAJ43913.1|  510|Caenorhabditis elegans Hypothetical pr...    28   9.7  
U40938-4|AAK68283.1|  447|Caenorhabditis elegans Cyclophilin fam...    28   9.7  
U40938-3|AAA81696.1|  466|Caenorhabditis elegans Cyclophilin fam...    28   9.7  
U31078-1|AAC47130.1|  466|Caenorhabditis elegans cyclophilin iso...    28   9.7  
AF537093-1|AAO85552.1|  387|Caenorhabditis elegans ubiquitin con...    28   9.7  

>AF016427-3|AAB65356.1|  730|Caenorhabditis elegans Yeast mcm
           (licensing factor) relatedprotein 7 protein.
          Length = 730

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 27/85 (31%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
 Frame = -2

Query: 440 RLRLSDVVEKEDVXEAIRLVEMSKQSLQHVEEXVQRGITSTDRIFAIVRDLA-GSNKTVK 264
           +LRLS +V++ DV EA+RL++ +K SL+  +  +++ +   D  FA++R+L    N  + 
Sbjct: 628 KLRLSTIVDESDVEEALRLMQFAKDSLRPEQNKIEKRMAPVDAAFAVLRELYHADNAPIA 687

Query: 263 VADVIERCVDKGFKPDQVDACIEEY 189
           +++ I+RC  KG     +  C+++Y
Sbjct: 688 ISNAIQRCARKGISEVALKKCLDQY 712


>Z79754-7|CAB02096.2|  387|Caenorhabditis elegans Hypothetical
           protein F25H2.8 protein.
          Length = 387

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/44 (34%), Positives = 28/44 (63%)
 Frame = -2

Query: 419 VEKEDVXEAIRLVEMSKQSLQHVEEXVQRGITSTDRIFAIVRDL 288
           V KE +    ++ ++++Q  QH++  VQ  IT+TDR+   +RD+
Sbjct: 185 VSKEGLDMLDKVSKINRQ--QHLDGKVQGSITATDRLMKEIRDI 226


>U40424-1|AAA81456.2|  461|Caenorhabditis elegans Twik family of
           potassium channelsprotein 18 protein.
          Length = 461

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -2

Query: 488 DQELARHTXASRPHSPRLRLSDVVEKEDVXEAIRLVEMSKQSLQHVEEXV 339
           + E+ ++T     H P+L  SDV EKE   E +R+   +  +  ++E  +
Sbjct: 412 NNEMHKYTAPRSSHQPKLVYSDVREKEVPIEVVRVEHFNHGNEDYLEHDI 461


>AF083650-1|AAC32861.1|  461|Caenorhabditis elegans potassium
           channel subunit n2P18 protein.
          Length = 461

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -2

Query: 488 DQELARHTXASRPHSPRLRLSDVVEKEDVXEAIRLVEMSKQSLQHVEEXV 339
           + E+ ++T     H P+L  SDV EKE   E +R+   +  +  ++E  +
Sbjct: 412 NNEMHKYTAPRSSHQPKLVYSDVREKEVPIEVVRVEHFNHGNEDYLEHDI 461


>Z49126-1|CAA88938.2|  605|Caenorhabditis elegans Hypothetical
           protein DH11.1 protein.
          Length = 605

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +3

Query: 24  KKNHHLFKIPNSYTLIH*MNLQLVPRRRTLREADR 128
           KK    F   N   L+H  N++  PRRR +RE DR
Sbjct: 447 KKLVSTFNFHNYDCLVHNSNIKSDPRRRDIRERDR 481


>Z92817-3|CAJ43914.1|  511|Caenorhabditis elegans Hypothetical
           protein W08G11.3b protein.
          Length = 511

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = -1

Query: 303 DSARPGRL-QQDRQSRRCHREVRR--QRIQTRSGGRLHRR 193
           DS R  R   +DR SRR H++V R  +R +TRS  R + R
Sbjct: 2   DSGRRSRSGSRDRDSRRRHKKVHRHKRRSRTRSRSRSYER 41


>Z81502-5|CAB04108.2|  672|Caenorhabditis elegans Hypothetical
           protein F14B6.5 protein.
          Length = 672

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 20/84 (23%), Positives = 37/84 (44%)
 Frame = -2

Query: 440 RLRLSDVVEKEDVXEAIRLVEMSKQSLQHVEEXVQRGITSTDRIFAIVRDLAGSNKTVKV 261
           ++ + D V + D  +   +    K+ +  +E   + G ++   I     +LA    +  V
Sbjct: 553 KVYILDAVPRHDTYKTKLIARWLKEGVIPLEIDKRLGQSNAQLIDGSSYELARRRYSQLV 612

Query: 260 ADVIERCVDKGFKPDQVDACIEEY 189
           AD   RCV   +KPD  ++  E Y
Sbjct: 613 ADCDGRCVLLDYKPDFYNSITESY 636


>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical protein
            H03E18.1 protein.
          Length = 1147

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -2

Query: 425  DVVEKEDVXEAIRLVEMSKQSLQHVEEXVQRGITST 318
            D  EKED+ +  RLVEM K   Q +E+  +  IT +
Sbjct: 895  DSQEKEDINKDPRLVEMKKVEAQVLEKLAKMEITES 930


>Z93375-4|CAB07562.2|  647|Caenorhabditis elegans Hypothetical
           protein C38C6.2 protein.
          Length = 647

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 201 ASVHLIWFESFVDAPLDDIGDFDGLV 278
           A  + +W  SF D+  D +GD DGL+
Sbjct: 137 AVAYHVWVPSFQDSDGDGVGDVDGLI 162


>Z92817-2|CAJ43913.1|  510|Caenorhabditis elegans Hypothetical
           protein W08G11.3a protein.
          Length = 510

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = -1

Query: 303 DSARPGRL-QQDRQSRRCHREVR-RQRIQTRSGGRLHRR 193
           DS R  R   +DR SRR H++ R ++R +TRS  R + R
Sbjct: 2   DSGRRSRSGSRDRDSRRRHKKHRHKRRSRTRSRSRSYER 40


>U40938-4|AAK68283.1|  447|Caenorhabditis elegans Cyclophilin family
           protein 8, isoformb protein.
          Length = 447

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 294 RPGRLQQDRQSRRCHREVRRQRIQTRSGGRLHRR 193
           R  + + +RQ +   RE++RQ+    SG R  RR
Sbjct: 371 RQNQRELERQKQEAERELKRQQENEESGNRRRRR 404


>U40938-3|AAA81696.1|  466|Caenorhabditis elegans Cyclophilin family
           protein 8, isoforma protein.
          Length = 466

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 294 RPGRLQQDRQSRRCHREVRRQRIQTRSGGRLHRR 193
           R  + + +RQ +   RE++RQ+    SG R  RR
Sbjct: 390 RQNQRELERQKQEAERELKRQQENEESGNRRRRR 423


>U31078-1|AAC47130.1|  466|Caenorhabditis elegans cyclophilin
           isoform 8 protein.
          Length = 466

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 294 RPGRLQQDRQSRRCHREVRRQRIQTRSGGRLHRR 193
           R  + + +RQ +   RE++RQ+    SG R  RR
Sbjct: 390 RQNQRELERQKQEAERELKRQQENEESGNRRRRR 423


>AF537093-1|AAO85552.1|  387|Caenorhabditis elegans ubiquitin
           conjugating enzyme UBC-25 protein.
          Length = 387

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/44 (31%), Positives = 27/44 (61%)
 Frame = -2

Query: 419 VEKEDVXEAIRLVEMSKQSLQHVEEXVQRGITSTDRIFAIVRDL 288
           V KE +    +  ++++Q  QH++  VQ  IT++DR+   +RD+
Sbjct: 185 VSKEGLDMLDKASKINRQ--QHLDGKVQGSITASDRLMKEIRDI 226


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,396,078
Number of Sequences: 27780
Number of extensions: 256128
Number of successful extensions: 778
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)