Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_L10
         (784 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40952-2|AAA81737.1|  818|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z68270-11|CAJ90499.1|  394|Caenorhabditis elegans Hypothetical p...    29   5.0  
Z68270-10|CAA92572.2|  459|Caenorhabditis elegans Hypothetical p...    29   5.0  
AY305838-1|AAR11983.1|  459|Caenorhabditis elegans nuclear recep...    29   5.0  
AF083227-1|AAD03685.1|  290|Caenorhabditis elegans nuclear recep...    29   5.0  
Z78542-2|CAB01744.2|  641|Caenorhabditis elegans Hypothetical pr...    28   6.6  

>U40952-2|AAA81737.1|  818|Caenorhabditis elegans Hypothetical
           protein C03B1.7 protein.
          Length = 818

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = +3

Query: 108 IKHFKRKAQK-CSEDFVQQSA**TIYPINNQLIQNIKKKHPTKSSRNFTGLLMKNYLTLI 284
           I++ K+  Q  C ++ V +     +Y ++ +  +  KK+      RN +G+ +K+Y TL 
Sbjct: 123 IENHKKNIQALCKQNAVAEQCLWNVYHVSGKPAE--KKEQRNDMDRNISGVSVKDYETLK 180

Query: 285 NIISRSP 305
           N   +SP
Sbjct: 181 NFEDKSP 187


>Z68270-11|CAJ90499.1|  394|Caenorhabditis elegans Hypothetical
           protein ZC410.1b protein.
          Length = 394

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +3

Query: 240 RNFTGLLMKNYLTLINIISRSPNICIYVTHNLNYQH*LSIRKSFIKSS 383
           RNF G+L  +++ L +  +R P    + +H  N  +   +   FI SS
Sbjct: 176 RNFRGMLRHDFVMLFDYATRFPEFNSFTSHEKNMFYRQIVAVDFILSS 223


>Z68270-10|CAA92572.2|  459|Caenorhabditis elegans Hypothetical
           protein ZC410.1a protein.
          Length = 459

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +3

Query: 240 RNFTGLLMKNYLTLINIISRSPNICIYVTHNLNYQH*LSIRKSFIKSS 383
           RNF G+L  +++ L +  +R P    + +H  N  +   +   FI SS
Sbjct: 241 RNFRGMLRHDFVMLFDYATRFPEFNSFTSHEKNMFYRQIVAVDFILSS 288


>AY305838-1|AAR11983.1|  459|Caenorhabditis elegans nuclear receptor
           NHR-11 protein.
          Length = 459

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +3

Query: 240 RNFTGLLMKNYLTLINIISRSPNICIYVTHNLNYQH*LSIRKSFIKSS 383
           RNF G+L  +++ L +  +R P    + +H  N  +   +   FI SS
Sbjct: 241 RNFRGMLRHDFVMLFDYATRFPEFNSFTSHEKNMFYRQIVAVDFILSS 288


>AF083227-1|AAD03685.1|  290|Caenorhabditis elegans nuclear receptor
           NHR-11 protein.
          Length = 290

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +3

Query: 240 RNFTGLLMKNYLTLINIISRSPNICIYVTHNLNYQH*LSIRKSFIKSS 383
           RNF G+L  +++ L +  +R P    + +H  N  +   +   FI SS
Sbjct: 193 RNFRGMLRHDFVMLFDYATRFPEFNSFTSHEKNMFYRQIVAVDFILSS 240


>Z78542-2|CAB01744.2|  641|Caenorhabditis elegans Hypothetical
           protein F20D1.2 protein.
          Length = 641

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 535 FVKSYKV*NLIMYDETEKFSISLLYYLCVCTSVTEACHY 419
           FV S+ +  + + DE EKF I+L    C  TS  +  HY
Sbjct: 338 FVSSFNLDCVAIVDEPEKFEIALNSLECYKTSRRDEDHY 376


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,981,397
Number of Sequences: 27780
Number of extensions: 318016
Number of successful extensions: 665
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)