Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_L09
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    26   7.1  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    25   9.4  
SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc...    25   9.4  

>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1466

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 453  RVCELHRKDIHHVCRCRSSFLI 388
            R+   +RK IH  CR  SS L+
Sbjct: 1245 RISSFYRKSIHKKCRVGSSLLV 1266


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +2

Query: 302 IGLNLRSTL-EFLRKYYTDNTLKLV 373
           +GL++R  L +F  KYY+ N +KLV
Sbjct: 193 LGLDVRQELLKFYDKYYSANIMKLV 217


>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
           Nse5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +2

Query: 260 RVVISLYCKMKEINIGLNLRST-LEFLRK 343
           R  +S Y  MK I IG+N+R T  EF ++
Sbjct: 272 RYCLSQYILMKGIGIGINIRHTRCEFTKQ 300


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,991,254
Number of Sequences: 5004
Number of extensions: 61461
Number of successful extensions: 149
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)