Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_L09
(788 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0084 - 19579104-19579230,19580323-19580417,19580578-195807... 32 0.60
06_03_1006 + 26844161-26844198,26844304-26844372,26844526-268445... 30 1.8
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28... 29 3.2
03_05_0424 + 24107009-24107138,24107381-24107784 29 4.2
07_03_1710 - 28903614-28903673,28904982-28905146,28905453-289056... 29 5.6
07_03_1144 + 24331104-24331292,24331387-24331611,24332133-243325... 28 7.4
07_03_0493 + 18747427-18748356,18748594-18748697,18749586-187497... 28 7.4
05_03_0458 + 14280953-14281866,14281964-14282912 28 7.4
09_04_0685 + 19454234-19454399,19454500-19454819,19455337-19455594 28 9.7
08_02_0707 - 20212190-20214592 28 9.7
02_01_0077 - 546033-546223,546314-546566,546635-546865,547165-54... 28 9.7
>02_04_0084 -
19579104-19579230,19580323-19580417,19580578-19580719,
19581155-19581189,19581493-19581632,19581678-19581770,
19584007-19584244
Length = 289
Score = 31.9 bits (69), Expect = 0.60
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +3
Query: 483 PHGCLHDGPSGSLHGVVES--GVHDVLLGGAGDLFWKDSEGVTGMRPPTRP 629
P GC D + + V++ + D G+G+ F+ S VTG R PTRP
Sbjct: 95 PAGCDEDMAMAATYTAVQAHVSIRDRGTAGSGEPFFFSSYRVTGNRAPTRP 145
>06_03_1006 +
26844161-26844198,26844304-26844372,26844526-26844591,
26844831-26844902,26844982-26845053,26846179-26846244,
26846409-26846881,26846966-26847324,26847429-26847697,
26847780-26847918,26848323-26848462,26848612-26848768,
26848925-26848978,26849457-26849539,26851085-26851136
Length = 702
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -2
Query: 607 PVTPSESFQKRSPAPPRRTSCTPDSTTPWRDPLGPS*R 494
P TPS + P+PP +S P S TP GP+ R
Sbjct: 169 PPTPSPTNPNLEPSPPPPSSSAPPSRTPSNSSDGPTTR 206
>05_01_0041 +
281427-281549,281671-281730,281822-281868,282013-282089,
285368-285440,286193-286281,286665-286711,286805-286885,
287011-287179,287381-287600,287679-287744,288194-288310,
288591-288628,288935-289032
Length = 434
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -2
Query: 625 RVGGRIPVTPSESFQKRSPAPPRRTSCTPDSTTPWRDPLGP 503
R GG P ++RSP+PP R +P +P RD P
Sbjct: 299 RHGGTPSRRPGSPIRRRSPSPPPRRLRSPRHLSPRRDRGSP 339
>03_05_0424 + 24107009-24107138,24107381-24107784
Length = 177
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 607 PVTPSESFQKRSPAPPRRTSCTPDSTTPWRDPLG 506
P +P++ +R PP T+ TP S+ P PLG
Sbjct: 119 PTSPTQCRHRRPSRPPETTTATP-SSRPASSPLG 151
>07_03_1710 -
28903614-28903673,28904982-28905146,28905453-28905638,
28905784-28905927,28906281-28906460,28906559-28907215
Length = 463
Score = 28.7 bits (61), Expect = 5.6
Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Frame = -2
Query: 574 SPAPPRRTSCTP-DSTTPWRDPLGPS*RQP*GSTSV*I*GQPRMRTPSKRYSPRMPMPV 401
SP PP T+C P S P P PS P S P+ R PS + P PV
Sbjct: 36 SPIPPSPTTCYPVSSAAPTAPPPKPSPTPPPASPPP-APTPPQTRPPSPPPQQQQPRPV 93
>07_03_1144 +
24331104-24331292,24331387-24331611,24332133-24332521,
24332762-24332856,24333300-24333673
Length = 423
Score = 28.3 bits (60), Expect = 7.4
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Frame = +3
Query: 372 YSVSELLE----S*TGIGIRGEYLFDGVRIRGCPQI*TEVEP-HGCLHDGPSGS 518
Y V E LE S G R + DG R+R C + T EP G +H S S
Sbjct: 292 YGVEETLEAHSDSTAGFTDRHQKRSDGGRVRACAAVATGAEPVQGVVHSSSSSS 345
>07_03_0493 +
18747427-18748356,18748594-18748697,18749586-18749795,
18749992-18750597,18750819-18751095,18751163-18751310,
18751957-18752044,18752167-18752284
Length = 826
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -2
Query: 541 PDSTTPWRDPLGPS*RQP 488
P +TPWRDP S RQP
Sbjct: 10 PHDSTPWRDPSRASSRQP 27
>05_03_0458 + 14280953-14281866,14281964-14282912
Length = 620
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 607 PVTPSESFQKRSPAPPRRTSCTPDSTTPWRDP 512
P +P S + +P+PP S STTP P
Sbjct: 19 PTSPPSSCRNAAPSPPSSNSTPTSSTTPTVPP 50
>09_04_0685 + 19454234-19454399,19454500-19454819,19455337-19455594
Length = 247
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -2
Query: 646 SLXRRFGRVGGRIPVTPSESFQKRSPAP-PRRTSC 545
S RR G G PVT ++R P+P P +SC
Sbjct: 183 SSRRRAGDADGETPVTGVHGHRRRQPSPSPSSSSC 217
>08_02_0707 - 20212190-20214592
Length = 800
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/39 (30%), Positives = 16/39 (41%)
Frame = -3
Query: 528 HHGEIR*GHHEDSHEVQPRFRSEDSRVCELHRKDIHHVC 412
HHG+ HH D H S + + E K+ H C
Sbjct: 542 HHGDANKSHHHDHHHDSSNEESHHNSLTENSCKENHSHC 580
>02_01_0077 -
546033-546223,546314-546566,546635-546865,547165-547331,
547369-548008
Length = 493
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -2
Query: 607 PVTPSESFQK--RSPAPPRRTSCTPDSTTPWRDP 512
P TP + Q+ +SP PPRR P + P ++P
Sbjct: 79 PPTPPQQQQQPWQSPLPPRREPAPPRTVVPPQEP 112
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,469,435
Number of Sequences: 37544
Number of extensions: 403156
Number of successful extensions: 1084
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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