Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_L07
(784 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0306 + 20058640-20059159,20060406-20060819,20060921-200611... 71 1e-12
03_01_0034 + 318432-318825,318902-319851 71 1e-12
01_06_1060 + 34162161-34162554,34162613-34162675,34163262-341635... 71 1e-12
01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349 71 1e-12
06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379 69 3e-12
03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998 69 3e-12
02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467 69 3e-12
03_05_0575 + 25747813-25748206,25748567-25748614,25750296-257505... 67 2e-11
11_02_0058 + 7879859-7879951,7880844-7881078,7881165-7881535,788... 32 0.59
07_03_0994 + 23190344-23190456,23191367-23191581,23191663-231918... 32 0.59
03_05_0974 + 29324025-29324117,29325064-29325298,29325385-293257... 32 0.59
03_02_0186 - 6243487-6243799,6243892-6244400,6244495-6244557,624... 32 0.59
02_05_1127 + 34292894-34293284,34293948-34295443 30 1.8
03_02_0943 + 12598616-12598789,12599790-12601250 29 5.5
02_05_1137 - 34372803-34372869,34373088-34373229,34373334-343734... 29 5.5
10_02_0070 - 4919843-4919913,4921086-4921455 28 9.6
>05_04_0306 +
20058640-20059159,20060406-20060819,20060921-20061190,
20062179-20062849
Length = 624
Score = 70.5 bits (165), Expect = 1e-12
Identities = 36/51 (70%), Positives = 38/51 (74%), Gaps = 1/51 (1%)
Frame = -1
Query: 739 QELXKRXSXQFTXG-SGAXFXALYTGEGMDEMEFTEAESNMNDLVSEYQQY 590
QE+ +R S QFT F YTGEGMDEMEFTEAESNMNDLVSEYQQY
Sbjct: 555 QEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 605
>03_01_0034 + 318432-318825,318902-319851
Length = 447
Score = 70.5 bits (165), Expect = 1e-12
Identities = 36/51 (70%), Positives = 38/51 (74%), Gaps = 1/51 (1%)
Frame = -1
Query: 739 QELXKRXSXQFTXG-SGAXFXALYTGEGMDEMEFTEAESNMNDLVSEYQQY 590
QE+ +R S QFT F YTGEGMDEMEFTEAESNMNDLVSEYQQY
Sbjct: 375 QEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 425
>01_06_1060 +
34162161-34162554,34162613-34162675,34163262-34163531,
34163944-34164623
Length = 468
Score = 70.5 bits (165), Expect = 1e-12
Identities = 36/51 (70%), Positives = 38/51 (74%), Gaps = 1/51 (1%)
Frame = -1
Query: 739 QELXKRXSXQFTXG-SGAXFXALYTGEGMDEMEFTEAESNMNDLVSEYQQY 590
QE+ +R S QFT F YTGEGMDEMEFTEAESNMNDLVSEYQQY
Sbjct: 396 QEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 446
>01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349
Length = 447
Score = 70.5 bits (165), Expect = 1e-12
Identities = 36/51 (70%), Positives = 38/51 (74%), Gaps = 1/51 (1%)
Frame = -1
Query: 739 QELXKRXSXQFTXG-SGAXFXALYTGEGMDEMEFTEAESNMNDLVSEYQQY 590
QE+ +R S QFT F YTGEGMDEMEFTEAESNMNDLVSEYQQY
Sbjct: 375 QEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 425
>06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379
Length = 446
Score = 69.3 bits (162), Expect = 3e-12
Identities = 35/51 (68%), Positives = 38/51 (74%), Gaps = 1/51 (1%)
Frame = -1
Query: 739 QELXKRXSXQFTXG-SGAXFXALYTGEGMDEMEFTEAESNMNDLVSEYQQY 590
QE+ +R S QFT F YTGEGMDEMEFTEAESNMNDLV+EYQQY
Sbjct: 375 QEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQY 425
>03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998
Length = 444
Score = 69.3 bits (162), Expect = 3e-12
Identities = 35/51 (68%), Positives = 38/51 (74%), Gaps = 1/51 (1%)
Frame = -1
Query: 739 QELXKRXSXQFTXG-SGAXFXALYTGEGMDEMEFTEAESNMNDLVSEYQQY 590
QE+ +R S QFT F YTGEGMDEMEFTEAESNMNDLV+EYQQY
Sbjct: 375 QEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQY 425
>02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467
Length = 447
Score = 69.3 bits (162), Expect = 3e-12
Identities = 35/51 (68%), Positives = 38/51 (74%), Gaps = 1/51 (1%)
Frame = -1
Query: 739 QELXKRXSXQFTXG-SGAXFXALYTGEGMDEMEFTEAESNMNDLVSEYQQY 590
QE+ +R S QFT F YTGEGMDEMEFTEAESNMNDLV+EYQQY
Sbjct: 375 QEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQY 425
>03_05_0575 +
25747813-25748206,25748567-25748614,25750296-25750565,
25750658-25751334
Length = 462
Score = 66.9 bits (156), Expect = 2e-11
Identities = 34/51 (66%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Frame = -1
Query: 739 QELXKRXSXQFTXG-SGAXFXALYTGEGMDEMEFTEAESNMNDLVSEYQQY 590
QE+ +R S QFT F YT EGMDEMEFTEAESNMNDLV+EYQQY
Sbjct: 391 QEMFRRVSEQFTAMFRRKAFLHWYTSEGMDEMEFTEAESNMNDLVAEYQQY 441
>11_02_0058 +
7879859-7879951,7880844-7881078,7881165-7881535,
7881648-7882304
Length = 451
Score = 31.9 bits (69), Expect = 0.59
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -1
Query: 685 FXALYTGEGMDEMEFTEAESNMNDLVSEYQQ 593
F Y GEGM+E EF+EA ++ L +Y++
Sbjct: 404 FVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>07_03_0994 +
23190344-23190456,23191367-23191581,23191663-23191862,
23192420-23192928,23193048-23193363
Length = 450
Score = 31.9 bits (69), Expect = 0.59
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -1
Query: 685 FXALYTGEGMDEMEFTEAESNMNDLVSEYQQ 593
F Y GEGM+E EF+EA ++ L +Y++
Sbjct: 404 FVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>03_05_0974 +
29324025-29324117,29325064-29325298,29325385-29325755,
29325864-29326520
Length = 451
Score = 31.9 bits (69), Expect = 0.59
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -1
Query: 685 FXALYTGEGMDEMEFTEAESNMNDLVSEYQQ 593
F Y GEGM+E EF+EA ++ L +Y++
Sbjct: 404 FVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>03_02_0186 -
6243487-6243799,6243892-6244400,6244495-6244557,
6245482-6245681,6246125-6246519,6246776-6246888
Length = 530
Score = 31.9 bits (69), Expect = 0.59
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -1
Query: 685 FXALYTGEGMDEMEFTEAESNMNDLVSEYQQ 593
F Y GEGM+E EF+EA ++ L +Y++
Sbjct: 485 FVHWYVGEGMEEGEFSEAREDLAALEKDYEE 515
>02_05_1127 + 34292894-34293284,34293948-34295443
Length = 628
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 553 RQTLRPRRRWPPGTVGTRRQGRS 621
R T +P+RRWPPG+ G +G S
Sbjct: 83 RATGQPKRRWPPGSSGGGARGGS 105
>03_02_0943 + 12598616-12598789,12599790-12601250
Length = 544
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = -2
Query: 342 ICSIHSLIFHQASLRARSEICKG*SKIDTFYLHMCSRNKMADQNS 208
+ I +L+ ++S S +C G + Y +CS+ + AD+NS
Sbjct: 309 LAEIKALLSSESSSECGSSVCDGVTLSAEEYFTLCSKAQEADENS 353
>02_05_1137 -
34372803-34372869,34373088-34373229,34373334-34373403,
34373521-34373823,34374215-34374280,34374425-34374490,
34374584-34374682,34376153-34376310,34376951-34377039,
34377209-34377591
Length = 480
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/30 (53%), Positives = 18/30 (60%)
Frame = +1
Query: 541 APALRQTLRPRRRWPPGTVGTRRQGRSCCS 630
+PA RQ L R+ PG G RRQGR C S
Sbjct: 19 SPAWRQELA--RQESPGVAGGRRQGRWCRS 46
>10_02_0070 - 4919843-4919913,4921086-4921455
Length = 146
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 544 PALRQTLRPRRRWPPGTVGTRRQGRSCCSQ 633
PA+ + + +PPG +R R+CCS+
Sbjct: 58 PAIEARSQAKGMFPPGQTRSRSASRTCCSR 87
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,108,869
Number of Sequences: 37544
Number of extensions: 291730
Number of successful extensions: 665
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -