Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_L06
(775 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 191 1e-49
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 28 1.3
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S... 27 3.9
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 26 5.2
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 25 9.1
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S... 25 9.1
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|... 25 9.1
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 25 9.1
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc... 25 9.1
SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1 |Sc... 25 9.1
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 25 9.1
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 191 bits (465), Expect = 1e-49
Identities = 88/154 (57%), Positives = 113/154 (73%)
Frame = -3
Query: 773 VRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIIND 594
VR+ ++ N + APARP AIAPL V +PA NTG+ P KTSFFQAL IPTKI++GTIEI +D
Sbjct: 96 VRETIIANVIAAPARPNAIAPLDVFVPAGNTGMEPGKTSFFQALGIPTKITRGTIEITSD 155
Query: 593 VHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQA 414
VH++ KVG SEATLLNMLNISPF+YG+ V +YD G +F+PEILD+ EDL +
Sbjct: 156 VHLVSKDAKVGPSEATLLNMLNISPFTYGMDVLTIYDQGNVFSPEILDVSEEDLIGHLLS 215
Query: 413 GVANVAALSLAIGYPTIASAPHSIANGFKNLLAI 312
+ + A+SL YPTI S HS+ N +KNL+A+
Sbjct: 216 AASIITAISLGANYPTILSVMHSVVNAYKNLVAV 249
Score = 25.4 bits (53), Expect = 9.1
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -1
Query: 145 DDDMGFGLFD 116
D+DMGFGLFD
Sbjct: 303 DEDMGFGLFD 312
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 601 MISIVPFEILVGIERAWKKEVFSGPRPVLWAGMTTDNGAMAP 726
+IS P + L+GI AW E S R + T+ +AP
Sbjct: 289 IISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330
>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 26.6 bits (56), Expect = 3.9
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +3
Query: 594 IVDDFNSTL*NLGRDRKSLEERGLLWTEAGVVGGNDD*QWG 716
IVD NS + R + L ++G+L+ +GV GG + ++G
Sbjct: 101 IVDGGNSHYPDTTRRCEELAKKGILFVGSGVSGGEEGARYG 141
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 26.2 bits (55), Expect = 5.2
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +3
Query: 276 GSFFKLNLCDSSDGQKVLETIGNGMRG*SNSWVTNSQRKSSYISNSS 416
G FF + CD + G K + N S N K++Y +N S
Sbjct: 405 GKFFSQHSCDLASGNKSAQEGQNQFLSMVESEAKNLMNKTNYSANQS 451
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 9.1
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -1
Query: 145 DDDMGFGLFD 116
D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110
>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 9.1
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -1
Query: 145 DDDMGFGLFD 116
D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110
>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 109
Score = 25.4 bits (53), Expect = 9.1
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -1
Query: 145 DDDMGFGLFD 116
D+DMGFGLFD
Sbjct: 100 DEDMGFGLFD 109
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 9.1
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -1
Query: 145 DDDMGFGLFD 116
D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110
>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 25.4 bits (53), Expect = 9.1
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -1
Query: 145 DDDMGFGLFD 116
D+DMGFGLFD
Sbjct: 100 DEDMGFGLFD 109
>SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 215
Score = 25.4 bits (53), Expect = 9.1
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 594 IVDDFNSTL*NLGRDRKSL 650
+VD NSTL N+GR R S+
Sbjct: 98 VVDSVNSTLNNIGRGRLSV 116
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 9.1
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -1
Query: 145 DDDMGFGLFD 116
D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,826,573
Number of Sequences: 5004
Number of extensions: 52012
Number of successful extensions: 134
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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