Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_K21
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    51   2e-07
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    30   0.33 
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    30   0.33 
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|...    27   4.1  
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||...    26   5.4  
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|...    26   5.4  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.5  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 50.8 bits (116), Expect = 2e-07
 Identities = 22/27 (81%), Positives = 24/27 (88%)
 Frame = -1

Query: 728 EQFTAMFRRKAFLXXYTGEGMDEMXFT 648
           +QF+AMFRRKAFL  YTGEGMDEM FT
Sbjct: 383 DQFSAMFRRKAFLHWYTGEGMDEMEFT 409



 Score = 37.1 bits (82), Expect = 0.003
 Identities = 16/16 (100%), Positives = 16/16 (100%)
 Frame = -2

Query: 646 EAESNMNDLVSEYQQY 599
           EAESNMNDLVSEYQQY
Sbjct: 410 EAESNMNDLVSEYQQY 425


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 725 QFTAMFRRKAFLXXYTGEGMDEMXFTRG*E 636
           +F  M+ ++AF+  Y GEGM+E  F+   E
Sbjct: 398 KFDLMYSKRAFVHWYVGEGMEEGEFSEARE 427


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 725 QFTAMFRRKAFLXXYTGEGMDEMXFTRG*E 636
           +F  M+ ++AF+  Y GEGM+E  F+   E
Sbjct: 394 KFDLMYSKRAFVHWYVGEGMEEGEFSEARE 423


>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
           Met9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 18/72 (25%), Positives = 25/72 (34%)
 Frame = -2

Query: 700 RLSCXXTPARAWTRWXSPEAESNMNDLVSEYQQYXXXXXXXXXXXXXXXXXEIRGQLSPF 521
           R     +P    T W SP++ S + DL + Y +                   IR QL   
Sbjct: 365 RYGLRMSPKEITTSWGSPKSYSEIGDLFARYCEKKISSLPWSDLPISDEADLIRDQLLSM 424

Query: 520 TRRSRLYIK*PP 485
            R + L I   P
Sbjct: 425 NRNAFLTINSQP 436


>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 467

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 423 SYYINTKSKSIVDLSKGERWKGG 491
           SY++     SI+  S G++WK G
Sbjct: 56  SYFVTRNKSSIIAFSIGKKWKPG 78


>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 450 FCFSYLYSNFNSFRLQHA**NNLGSTR 370
           FCF   ++ F+SFR Q+A   NL S R
Sbjct: 243 FCFLKSFAMFSSFRSQNANLYNLNSIR 269


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 350 VFTFPVFFLDYEGQLWNVYCSKQLPSTTRA 261
           + TFP    D + QLWNV     L S +++
Sbjct: 72  ILTFPFLDPDSQNQLWNVNFRNLLKSLSKS 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,640,209
Number of Sequences: 5004
Number of extensions: 46917
Number of successful extensions: 99
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)