Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_K14
         (810 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0803 + 24737115-24737366,24738921-24739004,24739152-247392...    30   1.9  
04_01_0086 - 946630-947115                                             29   5.8  
03_05_0832 - 28037047-28037315,28037428-28037530,28037664-280376...    29   5.8  

>06_03_0803 +
           24737115-24737366,24738921-24739004,24739152-24739255,
           24739321-24739445,24739549-24739707,24740120-24740237,
           24740317-24740851,24740948-24741042,24741153-24741431,
           24741478-24741592,24741669-24741855,24741934-24742490
          Length = 869

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 687 SEHPFHSCILHLFPARFHISPDRCSLVAAAAPH 589
           SEHPF     +L  ++ HI P++C L    A H
Sbjct: 49  SEHPFFRKSGNLHGSQTHIEPEKCQLPGKCATH 81


>04_01_0086 - 946630-947115
          Length = 161

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -1

Query: 744 RRAPGMVVAGKPGPPCIGV--SEHPFHSCIL 658
           R A G+ V G P  P +GV  S  P H+C +
Sbjct: 131 RSAAGVGVGGAPASPAVGVMNSPSPLHACAM 161


>03_05_0832 -
           28037047-28037315,28037428-28037530,28037664-28037695,
           28037788-28038005,28038145-28038260,28038514-28038757,
           28039129-28039216,28039513-28039588,28040126-28040164,
           28040347-28040405,28041292-28041529
          Length = 493

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 238 YTVPWGFNGFINYIK 282
           Y VPWG  G +NYIK
Sbjct: 377 YIVPWGMYGCVNYIK 391


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,301,479
Number of Sequences: 37544
Number of extensions: 410791
Number of successful extensions: 838
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)