Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_K13
         (792 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    29   0.58 
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    29   1.0  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   9.4  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    25   9.4  
SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10 |Sch...    25   9.4  

>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -1

Query: 273 SLRIILRMQLFNHPRFLNKSLGASSKQIISSRIVK 169
           ++  +L  Q +N PR  N S+  S KQIIS  ++K
Sbjct: 124 TVTFLLTAQPYNGPRIPNASVHGSPKQIISGTLLK 158


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = -3

Query: 376 IPFQSTINQQAPVYSVRTI---QDRGDS-NHTMIRTPNFAPYYPTYAAIQPPPLP 224
           +P Q   +Q+ P YS  +    Q   D  NHT+    +F PY   ++A QPP LP
Sbjct: 270 LPSQFFTSQRNPNYSTDSFLLGQSLSDPFNHTL---QSFHPYESLFSAGQPPSLP 321


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -3

Query: 346  APVYSVRTIQDRGDSNHTMIRTPNFAPYYPTYAAIQPPPLP 224
            AP+++V  +Q +     T    P+ AP  P   +  PP +P
Sbjct: 1450 APMHAVAPVQPKAPGMVTNAPAPSSAPAPPAPVSQLPPAVP 1490


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -3

Query: 349 QAPVYSVRTIQDRGDSNHTMIRTPNFAPYYPTYAAIQPP 233
           Q P  S     DR   NH  +++ NF PY P  +   PP
Sbjct: 263 QNPHNSFPASADRLQKNHP-VQSSNFNPYTPAPSITVPP 300


>SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 370

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +2

Query: 440 GIGSIENRLTLSCCYGWQESSGRVLLSDVH--GLRRIGIKNRW 562
           G+  IE+ +  + C+ WQ  +G+  L  V+      +G++  W
Sbjct: 153 GVNEIEDGVGDNLCFNWQYDTGKRCLEFVYESSGAMLGVRGLW 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,619,961
Number of Sequences: 5004
Number of extensions: 47151
Number of successful extensions: 142
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)