Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_K13
         (792 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   3.3  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   7.5  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   7.5  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
 Frame = -2

Query: 509 PYRCFPA-NRSSSSKSTYFQ*TQSH 438
           PY  FP  NR     +TY+Q  Q H
Sbjct: 76  PYPRFPPYNRMDMRNATYYQHQQDH 100


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 530 REHRTAKPYRCFPANRSSSSKSTYFQ*TQSH 438
           R H  +KP++C   + S  +KS      +SH
Sbjct: 9   RNHFGSKPFKCEKCSYSCVNKSMLNSHLKSH 39


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/21 (42%), Positives = 9/21 (42%)
 Frame = -2

Query: 560 TCF*SQSAATREHRTAKPYRC 498
           TC       TR H   KPY C
Sbjct: 214 TCSKQLKVHTRTHTGEKPYTC 234



 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 530 REHRTAKPYRCFPANRSSSSK 468
           R H   KPY+C   ++S S K
Sbjct: 112 RTHTGEKPYQCEYCSKSFSVK 132


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,978
Number of Sequences: 438
Number of extensions: 3514
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)