Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_K11
(761 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 29 0.55
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 29 0.72
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p... 29 0.96
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|... 27 2.2
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 2.2
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|... 27 2.2
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 27 2.2
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch... 27 2.9
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 27 3.9
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c... 27 3.9
SPCC1020.04c |rpb6|rpo15|DNA-directed RNA polymerase I, II and I... 26 6.7
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 25 8.9
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S... 25 8.9
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 29.5 bits (63), Expect = 0.55
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = -2
Query: 484 NLPTETKPEQPAAGPLKQIFENSAVLQGIAGAVKKIQTTVNNPVKPRDSEVVEETKSDQ 308
N P+ +KP A GPL ++S +A A + +T N P ++ E T Q
Sbjct: 318 NSPSVSKPPSSATGPLYHSPQSSLTNSSVASADVQERTHNTNGASPIQDQISEFTDQHQ 376
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 29.1 bits (62), Expect = 0.72
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 3/102 (2%)
Frame = -2
Query: 610 FNFLNLLQPNRPGAQSTEKPAEATSTNGAASAAPDIAKPSESNLPTETKPEQP---AAGP 440
F+ LN +PN G+Q TE E + AA I S + + PE A
Sbjct: 7 FSILNTNEPNAGGSQVTESEIEEEDIEFLSFAALKIGATSSLSNSSLGLPEYSNLFAINN 66
Query: 439 LKQIFENSAVLQGIAGAVKKIQTTVNNPVKPRDSEVVEETKS 314
LK +F I G+ +Q ++ + + D+ V++++ S
Sbjct: 67 LKSLFVAGVPNYLIIGSTLDLQKSLIDADENVDANVLKDSAS 108
>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 28.7 bits (61), Expect = 0.96
Identities = 23/91 (25%), Positives = 41/91 (45%)
Frame = -2
Query: 586 PNRPGAQSTEKPAEATSTNGAASAAPDIAKPSESNLPTETKPEQPAAGPLKQIFENSAVL 407
PN A S + + + S N + + PSE NL + P PA+GP Q E +++
Sbjct: 289 PNSDDAYSPQVDSYSPSINSVPYTSNIVENPSEDNL-SPLPP--PASGPYSQEEEETSLF 345
Query: 406 QGIAGAVKKIQTTVNNPVKPRDSEVVEETKS 314
+ + +K + + P DS++ + S
Sbjct: 346 K----SQRKEENEEESKELPEDSDIYGKDSS 372
>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
3|||Manual
Length = 393
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Frame = +2
Query: 308 LIRFSLFNHFR----ISWLHWIIDCCLDLFNC 391
+I LFN R I WL W+I CC+ LF C
Sbjct: 222 VISIGLFNIRREMMIIIWLLWLIICCI-LFGC 252
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/47 (27%), Positives = 20/47 (42%)
Frame = -2
Query: 580 RPGAQSTEKPAEATSTNGAASAAPDIAKPSESNLPTETKPEQPAAGP 440
RP + +P+ + +A P A P S+LP +P P P
Sbjct: 138 RPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSP 184
>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
3|||Manual
Length = 368
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Frame = +2
Query: 308 LIRFSLFNHFR----ISWLHWIIDCCLDLFNC 391
+I LFN R I WL W+I CC+ LF C
Sbjct: 189 VISIGLFNIRREMMIIIWLLWLIICCI-LFGC 219
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/75 (20%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = -2
Query: 559 EKPAEATSTNGAASAAPDIAKPSESN--LPTETKPEQPAAGPLKQIFENSAVLQGIAGAV 386
++ A++ +++ AA D + SN + ++ K + P K++ ++LQ ++
Sbjct: 265 KEDADSAASSDAAELETDKSSNLSSNGEVKSDLKQDNGKEEPEKEVESTPSILQNFKVSL 324
Query: 385 KKIQTTVNNPVKPRD 341
++ N P K +D
Sbjct: 325 VNVENVPNEPFKRQD 339
>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 703
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/52 (28%), Positives = 29/52 (55%)
Frame = +2
Query: 272 TVYWQQNDASLLLIRFSLFNHFRISWLHWIIDCCLDLFNCSCDALQNCAVLE 427
++Y +Q+ SL+L R + F S+ ++++ ++FNC L+ VLE
Sbjct: 246 SIYDEQSLTSLILARLNKF-----SYPNYVLSRTSNVFNCRAQCLEYVEVLE 292
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 26.6 bits (56), Expect = 3.9
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = -2
Query: 565 STEKPAEATSTNGAASAA---PDIAKPSESNLPTETKPEQPAAGP 440
ST KP+ A TNG++S++ P + P SN E KP P
Sbjct: 407 STLKPSTANDTNGSSSSSSSNPRTSSPLASN--AENKPPVAQQSP 449
>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 26.6 bits (56), Expect = 3.9
Identities = 21/84 (25%), Positives = 37/84 (44%)
Frame = -2
Query: 574 GAQSTEKPAEATSTNGAASAAPDIAKPSESNLPTETKPEQPAAGPLKQIFENSAVLQGIA 395
G STEK + +S++ A + +PSE T ++ P+K ++L I
Sbjct: 229 GGSSTEKVGQPSSSDDKAKGSTSKDQPSEEEEKTSDIQDRKIKTPIK-----PSLLGKIR 283
Query: 394 GAVKKIQTTVNNPVKPRDSEVVEE 323
+V K T V + V ++V +
Sbjct: 284 SSVNKGMTDVASQVNRGMTDVASQ 307
>SPCC1020.04c |rpb6|rpo15|DNA-directed RNA polymerase I, II and III
subunit Rpb6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 142
Score = 25.8 bits (54), Expect = 6.7
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = -2
Query: 583 NRPGAQSTEKPAEATSTNGAASAAPDIAKPSESNLPTETKPEQPAAGPLK--QIFENSAV 410
+ PG ST E +++ A + +AK + P TK E+ + QI N+ V
Sbjct: 38 SHPGEPSTTVITEDVASSKTAQSGKAVAKEDRTTTPYMTKYERARILGTRALQISMNAPV 97
Query: 409 LQGIAGAVKKIQ 374
L + G +Q
Sbjct: 98 LVDLEGETDPLQ 109
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = -2
Query: 538 STNGAASAAPDIAKPSESNLPTETKPEQPAAGPLKQIFENSAV 410
++ SA P+ +SN P+ T P + P I +NS +
Sbjct: 409 NSKSTQSAVPENVSRFDSNEPSATSPILKRSSPTDSISQNSGL 451
>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 511 PDIAKPSESNLPTETKPEQPAAGPLKQIFENSAVL 407
P+I +S PTE +PE + + ENSA L
Sbjct: 15 PEIGNKQKSKTPTERRPEGISRELYSLLGENSAPL 49
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,351,753
Number of Sequences: 5004
Number of extensions: 41072
Number of successful extensions: 154
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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