Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_K09
         (790 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   1.3  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   1.3  
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces...    27   3.1  
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual     27   4.0  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
           EF hand and WH2 motif |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1794

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +1

Query: 340 QTRPPHQQPSKAPRSHAVQRPLPSGAFRPPAP--YQRAGSRGP 462
           QT+P    PS AP+     +P  +G   PP P  Y +A   GP
Sbjct: 194 QTQPFGAAPSFAPQPTGFVQPQQTGVVMPPQPTGYLQAQPTGP 236


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = -2

Query: 756  VPXPEDRPAYXRCX*XXSSAPVTPVDPVAGVPSFPIPVASGAPTGP 619
            VP P   P   +      SAP     P + +PS P P  SGAP  P
Sbjct: 1043 VPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAP--SGAPPVP 1086



 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 705  SSAPVTPVDPVAGVPSFPIPVASGAP 628
            S+AP  P  P AG+P  P+P A   P
Sbjct: 1214 STAPPVPT-PSAGLPPVPVPTAKAPP 1238



 Score = 25.4 bits (53), Expect = 9.4
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 322  RSQAQSQTRPPHQQPSKAPRSHAVQRPLPSGAFRPPAP 435
            +S + + + PP   P  AP S     P PSGA   PAP
Sbjct: 1054 KSSSGAPSAPP---PVPAPSSEIPSIPAPSGAPPVPAP 1088


>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 578

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 550 MSVATAASKLNKSEVNLISELGRDIL 473
           M ++T  SKLNK+E + + E   DIL
Sbjct: 301 MDLSTIQSKLNKNEYSTLEEFESDIL 326


>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +1

Query: 289 PTRXPS*GQWRRSQAQSQTRPPHQQPSKAPRSHAVQRPLPSGAFRPPAP 435
           P   PS    + +Q    +   HQ+P +AP S AV+ P  + A   P P
Sbjct: 180 PVAAPSTATTQHTQLPKTSAVSHQKPHEAP-STAVKAPTATVAENEPYP 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,433,831
Number of Sequences: 5004
Number of extensions: 39763
Number of successful extensions: 134
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)