Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_K08
(782 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL023844-1|CAA19526.1| 401|Caenorhabditis elegans Hypothetical ... 35 0.057
AF099916-2|AAC68776.1| 1145|Caenorhabditis elegans Hypothetical ... 29 5.0
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t... 28 6.6
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t... 28 6.6
AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel... 28 6.6
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel... 28 6.6
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel... 28 6.6
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel... 28 6.6
>AL023844-1|CAA19526.1| 401|Caenorhabditis elegans Hypothetical
protein Y48A6B.1 protein.
Length = 401
Score = 35.1 bits (77), Expect = 0.057
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Frame = +3
Query: 219 KYIFFCASNTVIAYHLCTKQLLSLSHVCLSSIDMKTQSLH-SIVFAFRKWPHGDRRDRSE 395
++ F +T+I Y L ++HV SSI + T SL+ S++ A+ +W DR D
Sbjct: 90 RFRIFDTPSTIIGYSYPWLIFL-ITHVT-SSIALHTTSLYLSVIMAYIRWTALDRLDAKW 147
Query: 396 QQHGLKEAQRVMHSVILESIRRAYIVFHVLIAVED 500
HG + + ++I+ I ++ H ++ V +
Sbjct: 148 INHGALKQILIFTALIVSVISIPTVMVHKIVPVTE 182
>AF099916-2|AAC68776.1| 1145|Caenorhabditis elegans Hypothetical
protein F54C4.3 protein.
Length = 1145
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 505 DVANIDINIDLSLXLCRYLATAGVTVSAXPR 597
DV N+ NID LC Y+ + ++SA R
Sbjct: 11 DVVNVPTNIDFQCNLCEYVGKSDRSLSAHKR 41
>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1797
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -1
Query: 533 SILISIF-ATSLVLYGYKHVKDNICTSNTLQYYAVHYALCFFKPMLLLRAVPAIAMWPFT 357
S+ ISI S +L+ Y+ + DN L Y A + A+ +P +++R +P + +
Sbjct: 123 SVFISIIHLLSFLLHCYQLI-DNFFPFLHLNYRAWYGAIRSIRPFIIIRLIPLVVKFKLP 181
Query: 356 KSK 348
K++
Sbjct: 182 KNR 184
>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1831
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -1
Query: 533 SILISIF-ATSLVLYGYKHVKDNICTSNTLQYYAVHYALCFFKPMLLLRAVPAIAMWPFT 357
S+ ISI S +L+ Y+ + DN L Y A + A+ +P +++R +P + +
Sbjct: 123 SVFISIIHLLSFLLHCYQLI-DNFFPFLHLNYRAWYGAIRSIRPFIIIRLIPLVVKFKLP 181
Query: 356 KSK 348
K++
Sbjct: 182 KNR 184
>AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
b protein.
Length = 978
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -1
Query: 533 SILISIF-ATSLVLYGYKHVKDNICTSNTLQYYAVHYALCFFKPMLLLRAVPAIAMWPFT 357
S+ ISI S +L+ Y+ + DN L Y A + A+ +P +++R +P + +
Sbjct: 181 SVFISIIHLLSFLLHCYQLI-DNFFPFLHLNYRAWYGAIRSIRPFIIIRLIPLVVKFKLP 239
Query: 356 KSK 348
K++
Sbjct: 240 KNR 242
>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
a protein.
Length = 1562
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -1
Query: 533 SILISIF-ATSLVLYGYKHVKDNICTSNTLQYYAVHYALCFFKPMLLLRAVPAIAMWPFT 357
S+ ISI S +L+ Y+ + DN L Y A + A+ +P +++R +P + +
Sbjct: 181 SVFISIIHLLSFLLHCYQLI-DNFFPFLHLNYRAWYGAIRSIRPFIIIRLIPLVVKFKLP 239
Query: 356 KSK 348
K++
Sbjct: 240 KNR 242
>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
c protein.
Length = 1913
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -1
Query: 533 SILISIF-ATSLVLYGYKHVKDNICTSNTLQYYAVHYALCFFKPMLLLRAVPAIAMWPFT 357
S+ ISI S +L+ Y+ + DN L Y A + A+ +P +++R +P + +
Sbjct: 181 SVFISIIHLLSFLLHCYQLI-DNFFPFLHLNYRAWYGAIRSIRPFIIIRLIPLVVKFKLP 239
Query: 356 KSK 348
K++
Sbjct: 240 KNR 242
>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
d protein.
Length = 1861
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -1
Query: 533 SILISIF-ATSLVLYGYKHVKDNICTSNTLQYYAVHYALCFFKPMLLLRAVPAIAMWPFT 357
S+ ISI S +L+ Y+ + DN L Y A + A+ +P +++R +P + +
Sbjct: 153 SVFISIIHLLSFLLHCYQLI-DNFFPFLHLNYRAWYGAIRSIRPFIIIRLIPLVVKFKLP 211
Query: 356 KSK 348
K++
Sbjct: 212 KNR 214
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,657,202
Number of Sequences: 27780
Number of extensions: 214573
Number of successful extensions: 453
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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