Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_K08
         (782 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   7.4  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   9.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.8  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    21   9.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.8  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 340 QSFLLFVNGHMAIAGTALSNSMGLKKH 420
           Q F LF+  H  IA   +   MG++ +
Sbjct: 80  QPFSLFIPAHRKIAARLIDIFMGMRTY 106


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +1

Query: 199 NYFNRTRNIYFFAHRIRLLPIIYVQSSYC 285
           NY N  + +Y+  + I  +P+      YC
Sbjct: 104 NYNNNCKKLYYNINYIEQIPVPVPVPIYC 132


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 568 AGVTVSAXPRR*AVDSTRAYSGG 636
           +G+ V   PRR  +D+T  Y  G
Sbjct: 781 SGLGVEEIPRRIPMDATEVYLDG 803


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 5/13 (38%), Positives = 11/13 (84%)
 Frame = +1

Query: 448 RVFDVHILSFTCL 486
           ++FD+++L  TC+
Sbjct: 110 KIFDINLLGLTCM 122


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = -1

Query: 509  TSLVLYGYKHVKDNICTSNTLQYYAVHYALCF 414
            T +  +GY H  +  CT +  Q       +CF
Sbjct: 1672 TEMSTWGYHHNVNKHCTIHRTQVKETDDKICF 1703


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,653
Number of Sequences: 438
Number of extensions: 2568
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)