Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_K04
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like protein|Schi...    27   3.0  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    26   5.3  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    26   5.3  
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    26   7.0  

>SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 308

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 284 GAVTANPVSGTKEWHQSITADLRNHLVHKLVQAIFPTPDPSAM 156
           G+VTA+ V+  K   + +   L  H VH   +    T  PSA+
Sbjct: 13  GSVTASDVAAAKSGAEDLVNTLTAHTVHPSTELPSATSFPSAL 55


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +3

Query: 159  RRWVWCREYRLNQFVD*VVSEISRDRLVPLLRSRYWIGGHGSTRELE 299
            RR VW RE R + F+  V+S    D  +    SR+     GS++ L+
Sbjct: 1000 RRHVWYRECRSHYFISPVLSNQVIDEKIQYSMSRFLDVVTGSSQVLQ 1046


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 99  HVTLNLSSISY*VVHPF 149
           HV +N+ S+SY  VHPF
Sbjct: 296 HVYINIPSLSYWQVHPF 312


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +3

Query: 138 VHPFIEHRRWVWCREYRLNQFVD 206
           +H  I+ +++++CR Y    F+D
Sbjct: 16  IHSIIKTKKFLYCRHYSSKSFID 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,185,975
Number of Sequences: 5004
Number of extensions: 37172
Number of successful extensions: 98
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)