Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_K03
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   109   6e-25
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   107   2e-24
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    28   1.3  
SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc...    27   4.0  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    25   9.2  
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch...    25   9.2  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  109 bits (261), Expect = 6e-25
 Identities = 58/129 (44%), Positives = 78/129 (60%), Gaps = 2/129 (1%)
 Frame = -3

Query: 668 PGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKM 489
           PGVE           LAPGGHLGRFVIWT+SAFG LD +FGS    ++ KKN+ LP+  +
Sbjct: 225 PGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEAAQLKKNYFLPENII 284

Query: 488 ANTDLTRLLKSDEIRKVLRAPN-KRVIRA-TRKLNPLTNNKAMLKLNPYAAVXEEESYLR 315
           +N D+TRL+ SDEI+ +++A    RV RA  +K NPL N   + +LNPYA   +    L 
Sbjct: 285 SNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLARLNPYAKAYKANVKLN 344

Query: 314 AAQKEELEG 288
             +  +  G
Sbjct: 345 TGKTPKAAG 353


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  107 bits (257), Expect = 2e-24
 Identities = 56/110 (50%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
 Frame = -3

Query: 668 PGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKM 489
           PGVE           LAPGGHLGRFVIWT+SAFG LD +FGS    ++ KKN+ LP+  +
Sbjct: 225 PGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEVAQLKKNYFLPENII 284

Query: 488 ANTDLTRLLKSDEIRKVLRAPN-KRVIRA-TRKLNPLTNNKAMLKLNPYA 345
           +N D+TRL+ SDEI+ +++A    RV RA  +K NPL N   + +LNPYA
Sbjct: 285 SNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLSRLNPYA 334


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 19/73 (26%), Positives = 36/73 (49%)
 Frame = -3

Query: 527 KQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPY 348
           KQK + +  Q K     LT+   S E + VL       +R T+K   LTN+  ++K +P 
Sbjct: 730 KQKAHLSADQCKQLANVLTQA--SPEAKTVLEQHRLSEMRKTKKQTELTNSAHVIKPSPT 787

Query: 347 AAVXEEESYLRAA 309
             +  +++  +++
Sbjct: 788 PQITVKQNTTKSS 800


>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -3

Query: 371 AMLKLNPYAAVXEEESYLRAAQKEELE 291
           A+LK + Y ++ EEES  R  ++EE++
Sbjct: 180 ALLKEDAYGSIEEEESKKRKFEEEEID 206


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 17/54 (31%), Positives = 32/54 (59%)
 Frame = +3

Query: 345 RVRIEFQHRLVVSERVQFACSTDHAFVGSTEDLPDLIRLEKTCEVSVGHLRLGQ 506
           +V +EF+ RL + +RV+       AF+GS E +  L+ + +T + ++  L LG+
Sbjct: 207 QVAVEFRKRLNIGDRVKDGLLYKDAFLGS-EAVDVLMHIVRTTDRNLA-LLLGR 258


>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 11/79 (13%)
 Frame = -3

Query: 518 KNFNLPQPKMANTDLTRLLKSDEIRKVLRAP----------NKRVIRATRKLNPL-TNNK 372
           KNF   +  M+  ++  +L  DE+R + R            +K +I  +++ + L  N +
Sbjct: 136 KNFFEDESLMSTEEIIEILSLDELRSLARQTKVCGKSRSEISKEIIFLSKRQSVLHCNGQ 195

Query: 371 AMLKLNPYAAVXEEESYLR 315
             L  + +  + ++ES+LR
Sbjct: 196 QFLSFDAFGVMHKQESFLR 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,215,612
Number of Sequences: 5004
Number of extensions: 38615
Number of successful extensions: 121
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)