Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_K01
         (832 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    27   2.5  
SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces ...    27   2.5  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    25   10.0 

>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 20/79 (25%), Positives = 36/79 (45%)
 Frame = -2

Query: 465 IVASQQKPTQIQSSSGTGHIVVHSSQPTIVRSQNVQSVVVTSGPAPGGAAQKLMVVGVQP 286
           + A+ +KP ++ SSS       H SQ +   + NV++   T+  AP  +     +  V+P
Sbjct: 323 VSAAYEKPAELSSSSVP---FPHKSQDSATPA-NVETTPSTATSAPKKSTAPFAINAVKP 378

Query: 285 QHNQGQAPVSVVAKPVFAR 229
                    + + KP FA+
Sbjct: 379 APGLSNISSASLPKPSFAK 397


>SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 227

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = -3

Query: 224 AADHNLRLN*TTSLISPDSHRSSTSPISNNLRRINYEKI 108
           AAD+ L    T S  SPD++ S +S  ++N+ R  Y+K+
Sbjct: 167 AADNTLPTITTPSSSSPDAYSSGSSRRTSNVLRQAYKKL 205


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -3

Query: 203 LN*TTSLISPDSHRSSTSPISNNLRRINYEKI 108
           +N T  LI  + H  S  PIS     INYE+I
Sbjct: 104 VNKTLGLILSNRHVVSPGPISARASFINYEEI 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,239,373
Number of Sequences: 5004
Number of extensions: 34482
Number of successful extensions: 92
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)