Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_J21
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    86   6e-18
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    29   0.76 
SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyce...    29   1.0  
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    27   3.1  
SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha sub...    27   3.1  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.0  
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo...    26   5.4  
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch...    26   5.4  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    26   5.4  
SPAC607.02c |||conserved fungal protein|Schizosaccharomyces pomb...    26   7.1  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    25   9.4  

>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 85.8 bits (203), Expect = 6e-18
 Identities = 56/141 (39%), Positives = 83/141 (58%), Gaps = 16/141 (11%)
 Frame = -3

Query: 579  ENYIPHQASDQHT-ETGMAVN----FSAGAEHAQLELRADSGDAERAQRNVMRWDRKRKK 415
            E Y+ H A  +   ETG A+N    F+  A HA L+L  D G  E++++   RWD K+KK
Sbjct: 664  EYYMSHYAPKESIQETGYAINSGENFTTAARHAILDLTNDEG-IEQSRKGGQRWDPKKKK 722

Query: 414  MVHV--DPDGGR---KMIRTESGFRVPASFRSGRFDDWK--KRNLAHDHSDDEPQAQTNK 256
             V++  D DG +   K+IR ESG ++PA++RSGRFD+WK  K   A+D    E +   + 
Sbjct: 723  FVNIINDEDGSKGSPKIIRGESGVKLPATYRSGRFDEWKASKAFGANDSPIRENKRYKHN 782

Query: 255  R----KPASEFRPHWVKHNER 205
            +    KPA +FR ++ K N+R
Sbjct: 783  KLQTPKPADKFRDNYHKQNKR 803


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = -3

Query: 273 QAQTNKRKPASEFRPHWVKHNE-RVAKKAAESKSREFRDKQQI-VKERMRK 127
           +  ++KRK   E  P   K  +  VAK++ +SK +   DK+Q+ VKE  +K
Sbjct: 271 ETASSKRKSDEESLPSQKKQKKVEVAKESKDSKQQNVSDKKQVTVKEVPKK 321


>SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 351

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 559 LMRYVVLISHWSLLFLLRXTAVTIS 633
           +  YV  +S WSL+FLL   A TI+
Sbjct: 302 IFEYVFYLSSWSLVFLLTLPATTIN 326


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 282 DEPQAQTNKRKPASEFRPHWVKHNERVAKK 193
           D  Q + N+   AS  RP W+ +N+    K
Sbjct: 145 DNDQPEKNESNTASTIRPPWIGNNDHATDK 174


>SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha
           subunit Tfg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 490

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = -3

Query: 372 TESGFRVPASFRSGRFDDWKKRNLAHDHSDDEPQAQTNKRKPASEFRPHWVKHNE 208
           +E+GF+V  + R  RF+   +RN     S DE +A+ NK+ P     P W    E
Sbjct: 180 SENGFKVIPTDRFYRFN---QRNNFQTLSIDEAEAKMNKKTPI----PRWFMKKE 227


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 202 YAFVVLHPVRTELRRWFPFI 261
           Y  ++ HP++TE R  FP++
Sbjct: 319 YKLIIRHPIKTEYRIAFPYL 338


>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
           Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 686

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -2

Query: 352 PGFVPQRPLRRLEKTQPRARPLRRRTASTNK*KETS 245
           P FV  R LRR E   P A+P++  T    K K TS
Sbjct: 455 PEFVLIRHLRREEALLPNAKPVKTATFGNGK-KATS 489


>SPCC126.14 |prp18||U5 snRNP-associated protein
           Prp18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 343

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/72 (22%), Positives = 33/72 (45%)
 Frame = -3

Query: 387 RKMIRTESGFRVPASFRSGRFDDWKKRNLAHDHSDDEPQAQTNKRKPASEFRPHWVKHNE 208
           R+ +   S   V  +FR G ++  +++    +    + Q +  KRK   E R  + +   
Sbjct: 12  RRQLEGTSELPVKKAFRRGDWEKEREKKYLQEKQQKDEQRELKKRK-LEEERLKYEEKKL 70

Query: 207 RVAKKAAESKSR 172
           R+++ A +  SR
Sbjct: 71  RISRLANKESSR 82


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 240 EFRPHWVKHNERVAKKAAESKSREFRDK 157
           EFRP ++KH   ++K  + ++S  F D+
Sbjct: 207 EFRPFFIKHQMSLSKYPSPNESDSFLDE 234


>SPAC607.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 231

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 21/64 (32%), Positives = 29/64 (45%)
 Frame = -3

Query: 315 KKRNLAHDHSDDEPQAQTNKRKPASEFRPHWVKHNERVAKKAAESKSREFRDKQQIVKER 136
           KK NL +    D  + Q    +  SEF    V     V+ K+  SK  EF DK++  K  
Sbjct: 56  KKGNLKNKKKKDYGKIQRLPGERLSEFSQR-VNKAIPVSFKSGPSKIDEFTDKKEKKKIA 114

Query: 135 MRKD 124
            RK+
Sbjct: 115 KRKE 118


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 594 GPVRDENYIPHQASDQHTETGMAVNFSAGAE 502
           G V D +YI +    QH   G A  F++G +
Sbjct: 195 GQVSDSSYIFYMLFQQHLFQGTAYGFNSGGD 225


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,239,279
Number of Sequences: 5004
Number of extensions: 39568
Number of successful extensions: 156
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)