Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_J20
         (754 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   4.1  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   4.1  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   4.1  
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               22   7.1  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   7.1  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   7.1  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   7.1  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   7.1  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +3

Query: 48  IMVLYHSIHFHSIPFIYPRITLHNIKIGLF 137
           I+  YHS   H  P+    I   N+KI  F
Sbjct: 425 IIDYYHSYKMHQKPYNKDEIIYPNLKIESF 454


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +3

Query: 48  IMVLYHSIHFHSIPFIYPRITLHNIKIGLF 137
           I+  YHS   H  P+    I   N+KI  F
Sbjct: 425 IIDYYHSYKMHQKPYNKDEIIYPNLKIESF 454


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/37 (21%), Positives = 18/37 (48%)
 Frame = +3

Query: 579 NQRFAYHIDKKHSXCHLHFKQRLTDVXEIPTDYXIYY 689
           N    Y+ +  +    L++K  + ++ +IP    +YY
Sbjct: 99  NYNNKYNYNNNNYNKKLYYKNYIINIEQIPVPVPVYY 135


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -1

Query: 199 VYVFVN*FLIIFAFLSPAMDSN--SPIFILC 113
           +Y+F++  LI   F++P M  N  +P   LC
Sbjct: 8   IYLFLSVILITSYFVTPVMPCNCKAPETALC 38


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +1

Query: 469 IGNCLKYVQKQSTDTTINKFTVQSHINTIYLFINQF*TSASLI 597
           +  CL  +QK     T+  F  +  + T  LF +Q  T  +L+
Sbjct: 484 MNECLLNIQKSPRTLTLGIFAEKLRLETKELFSSQQKTKNNLM 526


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +2

Query: 140 IHSRTQKCKYNEKLVYKYVHFCTLP 214
           IH+      YN+KL Y  ++   +P
Sbjct: 323 IHNNNNYKNYNKKLYYNIINIEQIP 347


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/37 (21%), Positives = 19/37 (51%)
 Frame = +3

Query: 579 NQRFAYHIDKKHSXCHLHFKQRLTDVXEIPTDYXIYY 689
           N  + Y+ +  +    L++K  + ++ +IP    +YY
Sbjct: 326 NNNYKYNYNNYNKK--LYYKNYIINIEQIPVPVPVYY 360


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +2

Query: 305 QLLTLYILLSTMHI 346
           Q+LTL +L +T+HI
Sbjct: 5   QILTLGVLFNTLHI 18


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,708
Number of Sequences: 438
Number of extensions: 4488
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)