Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_J19
(792 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 223 2e-59
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 219 5e-58
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 81 1e-16
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 50 4e-07
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 31 0.25
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 27 2.3
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.4
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 26 7.1
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom... 26 7.1
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 25 9.4
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 223 bits (545), Expect = 2e-59
Identities = 100/142 (70%), Positives = 115/142 (80%)
Frame = -3
Query: 589 PPNQMVKXDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINY 410
P NQMVK DPR G+YMA C+LYRGDV+P+DV AA+ +IK++RTIQFVDWCPTGFK+GI Y
Sbjct: 302 PYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICY 361
Query: 409 QPPTVVPGGDLAKVQRAVCMLPNTTAIAEAWARLDHKFDLMYAKRAFVHWYVXXXXXXXX 230
+PP VPG +AKV RAVCML NTT+IAEAW+RLDHKFDLMY+KRAFVHWYV
Sbjct: 362 EPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGE 421
Query: 229 XXXXXEDLAALEKDYEEVGMDS 164
EDLAALE+DYEEVG DS
Sbjct: 422 FSEAREDLAALERDYEEVGQDS 443
Score = 29.9 bits (64), Expect = 0.44
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -1
Query: 696 PXXHFPLVTXAPVXSAEKA 640
P HFPLVT +P+ SA KA
Sbjct: 267 PRIHFPLVTYSPIVSAAKA 285
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 219 bits (534), Expect = 5e-58
Identities = 99/142 (69%), Positives = 113/142 (79%)
Frame = -3
Query: 589 PPNQMVKXDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINY 410
P NQMVK DPR G+YMA C+LYRGDV+P+DV AA+ TIK KRTIQFVDWCPTGFK+GI
Sbjct: 298 PYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICD 357
Query: 409 QPPTVVPGGDLAKVQRAVCMLPNTTAIAEAWARLDHKFDLMYAKRAFVHWYVXXXXXXXX 230
+PP + G ++AKV RAVCML NTT+IAEAW+RLDHKFDLMY+KRAFVHWYV
Sbjct: 358 RPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGE 417
Query: 229 XXXXXEDLAALEKDYEEVGMDS 164
EDLAALE+DYEEVG DS
Sbjct: 418 FSEAREDLAALERDYEEVGQDS 439
Score = 31.1 bits (67), Expect = 0.19
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = -1
Query: 696 PXXHFPLVTXAPVXSAEKA 640
P HFPLVT AP+ SA KA
Sbjct: 263 PRIHFPLVTYAPIVSAAKA 281
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 81.4 bits (192), Expect = 1e-16
Identities = 45/142 (31%), Positives = 71/142 (50%), Gaps = 3/142 (2%)
Frame = -3
Query: 583 NQMVKXDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQP 404
N MV DPRHG+Y+ L+RG V K+V+ I +++TK + FV+W P + P
Sbjct: 298 NMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVP 357
Query: 403 PTVVPGGDLAKVQRAVCMLPNTTAIAEAWARLDHKFDLMYAKRAFVHWYV---XXXXXXX 233
P DL + + + N+T+I E + RL +F M+ ++AF+HWY
Sbjct: 358 PK-----DL---KMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFT 409
Query: 232 XXXXXXEDLAALEKDYEEVGMD 167
DL + + Y+E G+D
Sbjct: 410 EAESNMNDLVSEYQQYQEAGID 431
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 50.0 bits (114), Expect = 4e-07
Identities = 28/112 (25%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Frame = -3
Query: 589 PPNQMVKXDP-RHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGIN 413
P NQMV +P + +++ + +G+ P DV+ ++ I+ +R F+ W P +V ++
Sbjct: 302 PKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALS 361
Query: 412 YQPPTVVPGGDLAKVQRAVCMLPNTTAIAEAWARLDHKFDLMYAKRAFVHWY 257
+ P + ++ + ML N T+IA + R ++D + + AF+ Y
Sbjct: 362 KKSPYIKTNHRVSGL-----MLANHTSIASLFKRTLDQYDRLRKRNAFLEQY 408
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 30.7 bits (66), Expect = 0.25
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -1
Query: 522 VVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 388
VV P + RP++P P LS V PV+ V + PP P
Sbjct: 552 VVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAP 596
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 27.5 bits (58), Expect = 2.3
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Frame = -1
Query: 318 GLALTTSSTSCTPSVLSCTGTSVRVWRRESXPKPVRTWLPS--RRITKKSAWTPLKARVR 145
G+ TS TS T S S++ S P P W P+ S+ TP+ V
Sbjct: 148 GVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSSALGTSSKTPVYVVVD 207
Query: 144 EPKSTK 127
EP+ TK
Sbjct: 208 EPRFTK 213
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -1
Query: 486 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 400
+LP KPS+ +++S V+P S STTS+P
Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +1
Query: 505 WVRRHHGTAYSKPCTCHDGG 564
W R H Y+KPC DGG
Sbjct: 16 WRRDHPFGFYAKPCKSSDGG 35
>SPAC3C7.09 |set8||lysine methyltransferase Set8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 429
Score = 25.8 bits (54), Expect = 7.1
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = +1
Query: 358 RHVEPWPSRLRAPRWV 405
R+ + WPS++ P+WV
Sbjct: 154 RYSDSWPSKITLPKWV 169
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -1
Query: 489 PSLPSKPSVLSNSST--GVQPVSRSVSTTSHPPW 394
P PS+P+++SN ST G+Q V V + W
Sbjct: 531 PISPSRPALISNISTKKGIQVVGNMVYDPTRLRW 564
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,530,240
Number of Sequences: 5004
Number of extensions: 49087
Number of successful extensions: 173
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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