Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_J18
         (829 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0194 + 20820985-20821027,20822168-20822367,20822477-208225...    33   0.37 
05_01_0042 - 290077-290676,291093-291233,291675-291764,292364-29...    31   0.85 
06_03_1042 - 27089563-27089594,27090017-27090577,27090740-27090797     31   1.5  
05_01_0160 + 1081416-1081647,1081840-1082012,1082169-1082246,108...    29   6.0  
01_06_1614 - 38648495-38649706                                         28   7.9  
01_01_0829 + 6471032-6471870,6472490-6472685,6472772-6472956,647...    28   7.9  

>02_04_0194 +
           20820985-20821027,20822168-20822367,20822477-20822566,
           20822820-20822825,20822866-20823009,20823089-20823580
          Length = 324

 Score = 32.7 bits (71), Expect = 0.37
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -1

Query: 535 CSYPGCXXXYXKSSHLKAHARTHTGER 455
           C Y GC   +  SS LK H   HTGE+
Sbjct: 74  CHYAGCDKKFLDSSKLKRHFLIHTGEK 100



 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 568 PXPAARRIVXECSYPGCXXXYXKSSHLKAHARTHTGERR 452
           P P    ++  CSY GC   +  +  L+ HA  H GER+
Sbjct: 35  PEPTTE-VLFLCSYEGCGKTFVDAGALRKHAHVH-GERQ 71


>05_01_0042 -
           290077-290676,291093-291233,291675-291764,292364-292563,
           292685-292743,292827-292942
          Length = 401

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
 Frame = -3

Query: 473 HAHRGATFRXAWPDCEXXXXXSDELSRHKRTHTGEKKF--ESRVCNLRFMRSDHLAKXVK 300
           H H    +    P C      S +L RH   HTG+K F      C   F    +L   +K
Sbjct: 109 HVHNERQYICQEPGCGKKFVDSSKLKRHHLIHTGQKDFICPHPGCGKAFSLDFNLRSHLK 168

Query: 299 RHAKE 285
            HA E
Sbjct: 169 THALE 173



 Score = 31.5 bits (68), Expect = 0.85
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 535 CSYPGCXXXYXKSSHLKAHARTHTGER 455
           C  PGC   +  SS LK H   HTG++
Sbjct: 118 CQEPGCGKKFVDSSKLKRHHLIHTGQK 144


>06_03_1042 - 27089563-27089594,27090017-27090577,27090740-27090797
          Length = 216

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
 Frame = -2

Query: 699 PPKAXSPADQXXGLGPAGXXXXVXESXSPGAXVLP-TGGXVXRGXXXPPPGA 547
           PP   SP D    + PAG      ++ +P   + P TG         P PGA
Sbjct: 72  PPTPASPGDSPPSIAPAGNPPTPAQAGAPPPSIAPGTGSPPPATTTPPAPGA 123


>05_01_0160 +
           1081416-1081647,1081840-1082012,1082169-1082246,
           1082372-1082529,1082558-1082709,1083232-1083290,
           1083633-1083912,1084235-1084470,1084601-1084744,
           1084845-1085012
          Length = 559

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -1

Query: 535 CSYPGCXXXYXKSSHLKAHARTHTGE 458
           C   GC   Y +  HL  H  TH G+
Sbjct: 289 CHVDGCPFSYSRKDHLNRHLLTHQGK 314


>01_06_1614 - 38648495-38649706
          Length = 403

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 11/31 (35%), Positives = 12/31 (38%)
 Frame = -1

Query: 535 CSYPGCXXXYXKSSHLKAHARTHTGERRSXA 443
           CSYPGC   Y     L  H   H    +  A
Sbjct: 247 CSYPGCKGEYRTHQGLGGHVAGHINREKQAA 277


>01_01_0829 +
           6471032-6471870,6472490-6472685,6472772-6472956,
           6473206-6473539,6473629-6473833,6474927-6475033,
           6475117-6475269
          Length = 672

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 17/61 (27%), Positives = 22/61 (36%)
 Frame = -2

Query: 699 PPKAXSPADQXXGLGPAGXXXXVXESXSPGAXVLPTGGXVXRGXXXPPPGA*CXSARIPD 520
           PP+   P  +  G GP         + SP    LP G     G    P  + C +A  P 
Sbjct: 91  PPRGSRPGHRRTGSGPLIFTSCSSSATSPLTNALPAGNICPSGRLAKPLSS-CSAAATPP 149

Query: 519 A 517
           A
Sbjct: 150 A 150


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,890,017
Number of Sequences: 37544
Number of extensions: 228223
Number of successful extensions: 450
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)