Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_J16
         (844 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    28   1.4  
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...    26   5.8  

>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 20/56 (35%), Positives = 30/56 (53%)
 Frame = +2

Query: 98  YTVVQITLVKINTDYINNLIFQKTRHRYPSSLSLNVITFSLNTATRGRSYIDEGSL 265
           Y V+Q TLV  N +  N + + KTR R   +LS  +I  S  T T G + + +G +
Sbjct: 745 YNVLQNTLVAKNLEQANRIAYGKTRWRV-VTLSGQLIDKS-GTMTGGGTRVKKGGM 798


>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 412 GAVGERPGARARVSATSRTI 471
           G + E PGARARV+ T  T+
Sbjct: 266 GQMNEPPGARARVALTGLTV 285


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,176,552
Number of Sequences: 5004
Number of extensions: 67872
Number of successful extensions: 180
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)