Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_J16
         (844 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0752 - 24171847-24174321                                         30   2.0  
09_03_0141 + 12704611-12704987,12707391-12707760                       30   2.7  
01_01_0720 - 5593311-5595371,5597550-5598027,5598118-5598146           29   3.5  
06_01_0745 + 5570821-5571496,5572205-5572322,5572410-5572571,557...    29   6.1  
01_01_0718 - 5578959-5580761,5583683-5584160,5584239-5584267           28   8.1  

>06_03_0752 - 24171847-24174321
          Length = 824

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 500 LVGSQDIVMKIVLEVAETRARAPGRSPTAPRGSRYQ 393
           ++G  D V ++V ++AE   R P  SP AP+  R +
Sbjct: 138 MLGRDDYVGRVVFDLAEVPTRVPPDSPLAPQWYRLE 173


>09_03_0141 + 12704611-12704987,12707391-12707760
          Length = 248

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = -1

Query: 469 LFWKSRRRAHVHPVVPQQLLAARATKDRVTFTLNCKIIVK--KSFFKCSNVYNFVLMC 302
           L W +RRR  V      QL+A RA + R   T++  +      S F  S+ ++ +L C
Sbjct: 96  LAWGARRREKVQLECDNQLVADRAARGRQLRTMSLSLCFSSISSLFPTSSFFSHLLPC 153


>01_01_0720 - 5593311-5595371,5597550-5598027,5598118-5598146
          Length = 855

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = -2

Query: 510 NGLSCRLTRYR--YEDCSGSRGDARTCTRSFPNSSSRLALPKIELPS 376
           N  S   TR R   E+ SGSR DA   +R+  N ++R A+P  E+PS
Sbjct: 747 NSPSFTFTRPRRIVEEASGSRRDAACPSRNAENVAARAAIP--EMPS 791


>06_01_0745 +
           5570821-5571496,5572205-5572322,5572410-5572571,
           5572650-5572681,5573406-5573584,5573697-5573897
          Length = 455

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -2

Query: 747 NSQARSIAGGATAELCNIPTCRLAAIQNNVHSISFSRRLNPIC 619
           N  A+S +GG     CN+ +C  A + N   + S S  L P C
Sbjct: 291 NVTAQSTSGG-----CNVSSCSYAGLVNGTIATSLSSGLQPTC 328


>01_01_0718 - 5578959-5580761,5583683-5584160,5584239-5584267
          Length = 769

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = -2

Query: 474 EDCSGSRGDARTCTRSFPNSSSRLALPKIE 385
           E+ SGSR DA   +R+  N ++R A+P+++
Sbjct: 683 EEASGSRRDAACPSRNAENVAARAAIPEMQ 712


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,204,668
Number of Sequences: 37544
Number of extensions: 376251
Number of successful extensions: 869
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)