Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_J16
         (844 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    25   0.66 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   2.0  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   4.7  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   6.2  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   6.2  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   6.2  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   8.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   8.1  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   8.1  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 25.4 bits (53), Expect = 0.66
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -3

Query: 107 PLCNLCKNIYQNM 69
           P+CN+CK +Y ++
Sbjct: 33  PICNICKRVYSSL 45


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 556 IVSTVVLLNLTKRKNDTKKRQTYWIK 633
           +VST+++LN   R  DT +  + W+K
Sbjct: 309 VVSTILILNYHHRNADTHE-MSEWVK 333


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +2

Query: 35  TSYQCITCFVIACFDKYFY 91
           T     TC  +AC D Y Y
Sbjct: 310 TMIPACTCKAVACLDPYVY 328


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 556 IVSTVVLLNLTKRKNDTKKRQTYWIK 633
           +V T+V+LN+  RK  T K    W++
Sbjct: 313 VVITIVILNVHYRKPSTHK-MAPWVR 337


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 473 KIVLEVAETRARAPGRSPTAPRG 405
           K+ L V E+    PGR  T P G
Sbjct: 385 KMTLSVNESNITWPGRLQTKPEG 407


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
 Frame = +1

Query: 154 NFSKNETQISVLTLAERDN---IFTKHRNS 234
           NFSKN T + +  L  + N   I+T   NS
Sbjct: 508 NFSKNNTIVDISKLVNKRNNAKIYTSSVNS 537


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 440 RAPGRSPTAPRGSRYQR 390
           +APG+SP  P  S+ QR
Sbjct: 582 QAPGQSPDWPSTSQIQR 598


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 590  NEKTTLKRDRHIGLSLRENE 649
            NEK  + +D+ + +  RENE
Sbjct: 1483 NEKLHIPKDKSVSVLSRENE 1502


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 286 KSYAVTFQASLVDIASPSS 230
           + Y+  F +S+VD  SPSS
Sbjct: 22  RRYSKRFSSSIVDRRSPSS 40


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,695
Number of Sequences: 438
Number of extensions: 4410
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)